Metagenomic analysis reveals patterns and hosts of antibiotic resistance in different pig farms
文献类型： 外文期刊
第一作者： Ji, Bingzhen
作者： Ji, Bingzhen;Qin, Junjun;Ma, Yijia;Li, Bugao;Gao, Pengfei;Liu, Xin;Wang, Tian;Liu, Guiming;Wang, Guoliang
作者机构： Shanxi Agr Univ, Coll Anim Sci, Shanxi 030801, Peoples R China;Beijing Univ Agr, Coll Biosci & Resources Environm, Beijing 100097, Peoples R China;Beijing Acad Agr & Forestry Sci, Beijing Key Lab Agr Genet Resources & Biotechnol, Inst Biotechnol, Beijing 100097, Peoples R China
关键词： Metagenomic; Pig manure; Antibiotic resistance genes; Mobility; Bacterial host
期刊名称：ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH （ 2022影响因子：5.8； 五年影响因子：5.4 ）
ISSN： 0944-1344
年卷期： 2023 年
收录情况： SCI
摘要： In actual production environments, antibiotic-resistant genes (ARGs) are abundant in pig manure, which can form transmission chains through animals, the environment, and humans, thereby threatening human health. Therefore, based on metagenomic analysis methods, ARGs and mobile genetic elements (MGEs) were annotated in pig manure samples from 6 pig farms in 3 regions of Shanxi Province, and the potential hosts of ARGs were analyzed. The results showed that a total of 14 ARG types were detected, including 182 ARG subtypes, among which tetracycline, phenol, aminoglycoside, and macrolide resistance genes were the main ones. ARG profiles, MGE composition, and microbial communities were significantly different in different regions as well as between different pig farms. In addition, Anaerobutyricum, Butyrivibrio, and Turicibacter were significantly associated with multiple ARGs, and bacteria such as Prevotella, Bacteroides, and the family Oscillospiraceae carried multiple ARGs, suggesting that these bacteria are potential ARG hosts in pig manure. Procrustes analysis showed that bacterial communities and MGEs were significantly correlated with ARG profiles. Variation partitioning analysis results indicated that the combined effect of MGEs and bacterial communities accounted for 64.08% of resistance variation and played an important role in ARG profiles. These findings contribute to our understanding of the dissemination and persistence of ARGs in actual production settings, and offer some guidance for the prevention and control of ARGs contamination.
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