Identification of Novel Genomic Regions for Bacterial Leaf Pustule (BLP) Resistance in Soybean (Glycine max L.) via Integrating Linkage Mapping and Association Analysis

文献类型： 外文期刊

第一作者： Zhao, Fangzhou

作者： Zhao, Fangzhou;Cheng, Wei;Wang, Yanan;Kong, Jiejie;Antwi-Boasiako, Augustine;Zheng, Lingyi;Yan, Wenliang;Chang, Fangguo;Kong, Keke;Zhao, Tuanjie;Gao, Xuewen;Huang, Debao;Liu, Wusheng;Antwi-Boasiako, Augustine;Liao, Ying-Yu;Huerta, Alejandra I.;Zhang, Mengchen

作者机构： Nanjing Agr Univ, Natl Ctr Soybean Improvement, Key Lab Biol & Genet & Breeding Soybean, Minist Agr,State Key Lab Crop Genet & Germplasm E, Nanjing 210095, Peoples R China;Nanjing Agr Univ, Coll Plant Protect, Nanjing 210095, Peoples R China;North Carolina State Univ, Dept Hort Sci, Raleigh, NC 27607 USA;CSIR Crops Res Inst, AK420, Kumasi, Ghana;North Carolina State Univ, Dept Entomol & Plant Pathol, Raleigh, NC 27607 USA;Hebei Acad Agr & Forestry Sci, North China Key Lab Biol & Genet Improvement Soyb, Cereal & Oil Crop Inst,Natl Soybean Improvement C, Minist Agr,Lab Crop Genet & Breeding Hebei, Shijiazhuang 050000, Hebei, Peoples R China

关键词： linkage mapping; GWAS; qPCR; Xanthornonas axonopodis pv; glycines; bacterial leaf pustule; soybean

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 2021影响因子：6.208； 五年影响因子：6.628 ）

ISSN：

年卷期： 2022 年 23 卷 4 期

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收录情况： SCI

摘要： Bacterial leaf pustule (BLP), caused by Xanthornonas axonopodis pv. glycines (Xag), is a worldwide disease of soybean, particularly in warm and humid regions. To date, little is known about the underlying molecular mechanisms of BLP resistance. The only single recessive resistance gene rxp has not been functionally identified yet, even though the genotypes carrying the gene have been widely used for BLP resistance breeding. Using a linkage mapping in a recombinant inbred line (RIL) population against the Xag strain Chinese C5, we identified that quantitative trait locus (QTL) qrxp-17-2 accounted for 74.33% of the total phenotypic variations. We also identified two minor QTLs, qrxp-05-1 and qrxp-17-1, that accounted for 7.26% and 22.26% of the total phenotypic variations, respectively, for the first time. Using a genome-wide association study (GWAS) in 476 cultivars of a soybean breeding germplasm population, we identified a total of 38 quantitative trait nucleotides (QTNs) on chromosomes (Chr) 5, 7, 8, 9,15, 17, 19, and 20 under artificial infection with C5, and 34 QTNs on Chr 4, 5, 6, 9, 13, 16, 17, 18, and 20 under natural morbidity condition. Taken together, three QTLs and 11 stable QTNs were detected in both linkage mapping and GWAS analysis, and located in three genomic regions with the major genomic region containing qrxp_17_2. Real-time RT-PCR analysis of the relative expression levels of five potential candidate genes in the resistant soybean cultivar W82 following Xag treatment showed that of Glyma.17G086300, which is located in qrxp-17-2, significantly increased in W82 at 24 and 72 h post-inoculation (hpi) when compared to that in the susceptible cultivar Jack. These results indicate that Glyma.17G086300 is a potential candidate gene for rxp and the QTLs and QTNs identified in this study will be useful for marker development for the breeding of Xag-resistant soybean cultivars.

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