Selection and implementation of single nucleotide polymorphism markers for parentage analysis in crossbred cattle population
文献类型： 外文期刊
第一作者： Hu, L. R.
作者： Hu, L. R.;Li, D.;Wang, Y. C.;Zhou, L.;Yu, Y.;Zhang, Y.;Zhang, S. L.;Usman, T.;Li, D.;Chu, Q.;Usman, T.;Xie, Z. Q.;Hou, S. Y.;Liu, L.;Shi, W. H.
作者机构：
关键词： Holstein cattle; On-farm records; Parental errors; Simmental cattle; Single nucleotide polymorphism assays
期刊名称：ANIMAL （ 影响因子：3.24； 五年影响因子：3.223 ）
ISSN： 1751-7311
年卷期： 2021 年 15 卷 1 期
页码：
收录情况： SCI
摘要： Crossbreeding is an essential way of improving herd performance. However, frequent parentage record errors appear, which results in the lower accuracy of genetic parameter estimation and genetic evaluation. This study aims to build a single nucleotide polymorphism (SNP) panel with sufficient power for parentage testing in the crossbred population of Simmental and Holstein cattle. The direct sequencing technique in PCR products of pooling DNA along with matrix-assisted laser desorption/ionization time-of-flight MS method for genotyping the individuals was applied. A panel comprising 50 highly informative SNPs for parentage analysis was developed in the crossbred population. The average minor allele frequency for SNPs was 0.43, and the cumulative probability of exclusion for single-parent and both-parent inference met 0.99797 and 0.999999, respectively. The maker-set for parentage verification was then used in a group of 81 trios with aid of the likelihood-based parentage-assignment program of Cervus software. Reconfirmation with on-farm records showed that this 50-SNP system could provide sufficient and reliable information for parentage testing with the parental errors for mother-offspring and sire-offspring being 8.6 and 18.5%, respectively. In conclusion, a set of low-cost and efficient SNPs for the paternity testing in the Simmental and Holstein crossbred population are provided. (C) 2020 The Authors. Published by Elsevier Inc. on behalf of The Animal Consortium.
分类号：
- 相关文献
作者其他论文 更多>>
-
Supplementing pigeon grit with acidifier improves metabolism and the reproductive performance of breeding pigeons as well as the development of growth performance of squabs
作者：Zheng, S.;Tang, Y.;Huang, W.;Zhang, W.;Zhang, Y.;Yang, M.;Lu, H.;Li, Z.;He, Y.;Gao, H.;Wang, W.;Peng, J.;Huang, Y.;Liang, Y.;Qiu, X.;Liu, Y.;Gou, Z.;Qiu, Z.;Bin, Y.;Zhang, Z.;Wang, W.;Huang, Y.
关键词：Acidifier; breeder pigeon; squab; performance; metabolism
-
Arginine requirement of breeding pigeons during incubation and lactation in the 2+4 lactation pattern
作者：Zhang, W.;Zheng, S.;Huang, W.;Lu, X.;Lu, H.;Zhang, Y.;Lv, Y.;Li, Z.;Chen, W.;Mo, S.;Tan, G.;He, Y.;Huang, Q.;Li, Z.;Wang, W.;Huang, Y.;Peng, J.;Gou, Z.;Wang, J.;Wang, Z.;Li, Z.;Li, Z.;Xu, X.
关键词：Arginine; reproductive performance; growth; oxidative stress; breeding pigeon
-
PLASTIC FILM ALTERS SOIL PHYSICOCHEMICAL PROPERTIES AND MICROORGANISMS, AFFECTING THE GROWTH OF CIGAR TOBACCO
作者：Ahmed, H. G. M. D.;Yang, T.;Ahmed, H. G. M. D.;Zhang, Y.;Kong, C.;Iqbal, R.;Iqbal, R.;Shen, J.
关键词：film mulching; cigar tobacco; soil ecology; rhizosphere; microbial community
-
RNA-seq Reveals the Effects of Light on Reproductive Traits in Domesticated Geese
作者：Zhao, X.;Yue, S.;Sun, J.;Zhang, Y.;Peng, F.;He, H.;Li, M.;Guo, Z.;Ma, Z.
关键词：Brooding; RNA-seq; laying rate; melatonin; illuminationer
-
Reducing aflatoxins (Aspergillus flavus) in food and animal feed by physical methods and chemical degradation: An update
作者：Akhtar, M. F.;Zhang, Y.;Xinru, S.;Ma, Q.;Liangliang, L.;Changfa, W.;Umar, M.;Ahmad, E.;Ahmad, E.;Chunhua, M.
关键词：physical methods; aflatoxins; chemical degradation; food and animal feed products
-
Dietary supplementation with tryptophan improves the production and growth performance of breeding pigeons under 2+4 model
作者：Zheng, S.;Yan, K.;Tang, Y.;Zhang, W.;Zhang, Y.;Huang, W.;Yang, M.;Lu, H.;Li, Z.;He, Y.;Li, Z.;Gao, H.;Zhou, S.;Lv, Y.;Wang, W.;Huang, Y.;Peng, J.;Gou, Z.;Wang, Z.;Wang, J.;Li, Z.;Li, Z.;Xu, X.
关键词：Tryptophan; breeding pigeons; squab; performance; reproductive metabolism
-
Nutritional impacts of dietary selenium and iodine and their interaction on growth performance, antioxidant capacity and bone quality in Longyan ducklings
作者：Shang, X.;Xu, R.;Sarker, T.;Wang, S.;Zhang, Y.;Jin, C.;Wang, S.;Zheng, C.;Chen, W.;Sarker, T.;Wang, S.;Zhang, Y.;Jin, C.;Wang, S.;Zheng, C.;Chen, W.;Sarker, T.;Wang, S.;Zhang, Y.;Jin, C.;Wang, S.;Zheng, C.;Chen, W.;Sarker, T.;Wang, S.;Zhang, Y.;Jin, C.;Wang, S.;Zheng, C.;Chen, W.;Sarker, T.;Wang, S.;Zhang, Y.;Jin, C.;Wang, S.;Zheng, C.;Chen, W.;Elokil, A.
关键词：Selenium; iodine; antioxidant; bone; ducklings
