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• Genomic prediction with NetGP based on gene network and multi-omics data in plants

  作者：Zhao, Longyang;Tang, Ping;Liu, Jianxiang;Xu, Zhi;Luo, Jinjing;Peng, Xin;Shen, Mengyuan;Wang, Chengrui;Zhao, Junliang;Zhou, Degui;Chen, Yibo;Liu, Qi;Peng, Xin;Shen, Mengyuan;Zhao, Junliang;Zhou, Degui;Chen, Yibo;Liu, Qi;Peng, Xin;Shen, Mengyuan;Zhao, Junliang;Zhou, Degui;Chen, Yibo;Liu, Qi;Peng, Xin;Shen, Mengyuan;Zhao, Junliang;Zhou, Degui;Chen, Yibo;Liu, Qi;Wang, Chengrui;Wang, Runfeng;Fan, Zhilan;Tang, Xiaoyan

  关键词：genomic selection; feature selection; deep learning; multi-omics predictions; gene network

• Natural variation in CTF1 conferring cold tolerance at the flowering stage in rice

  作者：Dong, Jingfang;Zhang, Shaohong;Hu, Haifei;Wang, Jian;Li, Risheng;Wu, Jing;Chen, Jiansong;Zhou, Lian;Ma, Yamei;Li, Wenhui;Nie, Shuai;Liu, Bin;Zhao, Junliang;Yang, Tifeng;Li, Risheng;Wu, Jing;Wang, Shaokui;Zhang, Guiquan

  关键词：cold tolerance; QTL; single segment substitution line; haplotype analysis; functional site; rice

• Phylogenomic and super-pangenome analyses unveil the genetic landscape of tomato evolution and domestication

  作者：Yu, Jingyin;Chen, Qionglin;Yuan, Lu;Feng, Shouli;Huang, Miaomiao;Zheng, Peng;Tao, Xiaoyuan;Xu, Shengchun;Chen, Guang;Xu, Shengchun;Edwards, David;Edwards, David;Chen, Zhong-Hua

  关键词：gene-based super-pangenome; genetic diversity; agronomic traits; presence/absence variation (PAV); crop improvement; sustainable production

• Gap-free genome assemblies of two Pyrus bretschneideri cultivars and GWAS analyses identify a CCCH zinc finger protein as a key regulator of stone cell formation in pear fruit

  作者：Cao, Yunpeng;Feng, Xiaofeng;Hong, Jiayi;Cai, Yongping;Li, Xiaoxu;Jiang, Lan;Wang, Han;Xia, Zhichao;Li, Risheng;Hu, Haifei;Li, Risheng;Hu, Haifei;Li, Risheng;Hu, Haifei;Li, Risheng;Hu, Haifei;Lin, Mengfei;Shen, Fei;Ding, Baopeng;Ding, Baopeng;Huo, Heqiang;Abdullah, Muhammad;Varshney, Rajeev K.

  关键词：Pyrus bretschneideri; gap-free genome; stone cell formation; GWAS; transcriptional regulation

• Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle

  作者：Xia, Xiaoting;Wang, Fuwen;Luo, Xiaoyu;Li, Shuang;Zheng, Yining;Dang, Ruihua;Huang, Yongzhen;Lan, Xianyong;Wang, Yu;Deng, Lu;Han, Jianlin;Lei, Chuzhao;Chen, Ningbo;Wang, Fuwen;Ma, Zhijie;Lyu, Yang;Lyu, Wenfa;Ma, Zhijie;Li, Ruizhe;Wu, Zhipeng;Qu, Kaixing;Song, Rende;Liu, Jianyong;Zhang, Jicai;Huang, Bizhi;Wangdui, Basang;Zhuzha, Basang;Quji, Suolang;Zhao, Li;Wangmu, Silang;Luobu, Ciren;Cangjue, Nima;Luosang, Danzeng;Sizhu, Suolang;Cheng, Haijian;Xu, Luohao;Hu, Haifei;Hu, Haifei;Low, Waiyee;Low, Waiyee;Zheng, Zhuqing;Gao, Yuanpeng;Lenstra, Johannes A.;Han, Jianlin;Lyu, Wenfa;Yang, Xueyi

  关键词：cattle; coat color; genome assembly; high-altitude adaptation; structural variation

• Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle

  作者：Xia, Xiaoting;Wang, Fuwen;Luo, Xiaoyu;Li, Shuang;Zheng, Yining;Dang, Ruihua;Huang, Yongzhen;Lan, Xianyong;Wang, Yu;Deng, Lu;Han, Jianlin;Lei, Chuzhao;Chen, Ningbo;Wang, Fuwen;Ma, Zhijie;Lyu, Yang;Lyu, Wenfa;Ma, Zhijie;Li, Ruizhe;Wu, Zhipeng;Qu, Kaixing;Song, Rende;Liu, Jianyong;Zhang, Jicai;Huang, Bizhi;Wangdui, Basang;Zhuzha, Basang;Quji, Suolang;Zhao, Li;Wangmu, Silang;Luobu, Ciren;Cangjue, Nima;Luosang, Danzeng;Sizhu, Suolang;Cheng, Haijian;Xu, Luohao;Hu, Haifei;Hu, Haifei;Low, Waiyee;Low, Waiyee;Zheng, Zhuqing;Gao, Yuanpeng;Lenstra, Johannes A.;Han, Jianlin;Lyu, Wenfa;Yang, Xueyi

  关键词：cattle; coat color; genome assembly; high-altitude adaptation; structural variation

• Identification of new genomic loci for seed protein and oil content in the soybean pangenome using genome-wide association and haplotype analyses

  作者：Vuong, Tri D.;Lee, Dongho;Nguyen, Henry T.;He, Guangqi;Hu, Haifei;Bayer, Philipp E.;Edwards, David;Valliyodan, Babu;Schapaugh, William T.;Hessel, Rene;Hu, Haifei;Lee, Dongho;Bayer, Philipp E.

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