文献类型： 外文期刊
第一作者： Dong, Chenfeng
作者： Dong, Chenfeng;Hu, Yiyu;Ye, Chuyu;Fan, Longjiang;Guo, Longbiao
作者机构：
关键词： Chloroplast genome; Oryza sativa f; spontanea; phylogenetic analysis
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）
ISSN：
年卷期： 2021 年 6 卷 10 期
页码：
收录情况： SCI
摘要： The emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contains a large single-copy (LSC, 80,549 bp), a small single-copy (SSC, 12,347 bp) and a pair of inverted repeats (IRa and IRb, 20,803 bp each). A total of 132 unique genes were annotated, including 82 protein-coding genes, 42 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that O. sativa f. spontanea (indica type) appears closely related to cultivated indica rice rather than wild rice, supporting the hypothesis that weedy rice originated from cultivated rice.
分类号：
- 相关文献
作者其他论文 更多>>
-
A centromere map based on super pan-genome highlights the structure and function of rice centromeres
作者：Lv, Yang;Wang, Yueying;Jahan, Noushin;Ma, Jie;Qian, Qian;Guo, Longbiao;Lv, Yang;Liu, Congcong;Li, Xiaoxia;He, Huiying;He, Wenchuang;Chen, Wu;Yang, Longbo;Dai, Xiaofan;Cao, Xinglan;Yu, Xiaoman;Liu, Jiajia;Zhang, Bin;Wei, Hua;Zhang, Hong;Qian, Hongge;Shi, Chuanlin;Leng, Yue;Liu, Xiangpei;Guo, Mingliang;Wang, Xianmeng;Zhang, Zhipeng;Wang, Tianyi;Zhang, Bintao;Xu, Qiang;Cui, Yan;Zhang, Qianqian;Yuan, Qiaoling;Zhou, Yongfeng;Qian, Qian;Shang, Lianguang;Zheng, Xiaoming;Qian, Qian;Shang, Lianguang;Zheng, Xiaoming
关键词：centromere; super pan-genome; CentO satellite repeat; rice
-
Population genomic analysis unravels the evolutionary roadmap of pericarp color in rice
作者：Xie, Lingjuan;Wu, Dongya;Fang, Yu;Ye, Chuyu;Fan, Longjiang;Xie, Lingjuan;Wu, Dongya;Fang, Yu;Ye, Chuyu;Fan, Longjiang;Xie, Lingjuan;Fan, Longjiang;Fang, Yu;Zhu, Qian-Hao;Wei, Xinghua
关键词：red rice; population genomics; pericarp color; re-domestication; divergence time
-
Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice
作者：Wei, Hua;Wang, Xianmeng;Zhang, Zhipeng;Yang, Longbo;Zhang, Qianqian;Li, Yilin;He, Huiying;Chen, Dandan;Zhang, Bin;Leng, Yue;Cao, Xinglan;Cui, Yan;Shi, Chuanlin;Liu, Yifan;Lv, Yang;Ma, Jie;He, Wenchuang;Liu, Xiangpei;Xu, Qiang;Yuan, Qiaoling;Yu, Xiaoman;Wang, Tianyi;Qian, Hongge;Li, Xiaoxia;Zhang, Bintao;Zhang, Hong;Chen, Wu;Guo, Mingliang;Dai, Xiaofan;Qian, Qian;Shang, Lianguang;Zheng, Chongke;Xie, Xianzhi;Lv, Yang;Ma, Jie;Wang, Yuexing;Guo, Longbiao;Qian, Qian;Zheng, Xiaoming;Qian, Qian;Shang, Lianguang
关键词：super pan-genome; expression quantitative trait loci; GWAS; salt tolerance; rice
-
Genome-Wide Identification and Expression Profile Analysis of the Phenylalanine Ammonia-Lyase Gene Family in Hevea brasiliensis
作者：Liu, Hui;He, Qiguang;Hu, Yiyu;Lu, Ruilin;Wu, Shuang;Feng, Chengtian;Yuan, Kun;Wang, Zhenhui
关键词：rubber tree; phenylpropanoid metabolism; phenylalanine ammonia-lyase (PAL); hormone; abiotic stress; biotic stress; tapping panel dryness
-
Rice AGL1 determines grain size and sterile lemma identity
作者：Yu, Haiping;Wang, An;Zhang, Guangheng;Dong, Guojun;Guo, Longbiao;Qian, Qian;Ren, Deyong;Zhang, Guangheng;Qian, Qian;Ren, Deyong;Zhang, Guangheng;Qian, Qian;Ren, Deyong
关键词：Abnormal grain and sterile lemma 1; Oryza sativa; Grain size; Rudimentary glume
-
GR5 acts in the G protein pathway to regulate grain size in rice
作者：Wang, Yueying;Lv, Yang;Yu, Haiping;Hu, Peng;Wen, Yi;Wang, Junge;Wu, Hao;Zhu, Lixin;Wu, Kaixiong;Chai, Bingze;Liu, Jialong;Zeng, Dali;Zhang, Guangheng;Zhu, Li;Gao, Zhenyu;Dong, Guojun;Ren, Deyong;Shen, Lan;Zhang, Qiang;Li, Qing;Guo, Longbiao;Qian, Qian;Hu, Jiang;Qian, Qian;Hu, Jiang;Qian, Qian;Hu, Jiang;Tan, Yiqing;Xiong, Guosheng
关键词：grain size; G protein g subunit; GR5; AP2; transcription factor; rice (Oryza sativa L.)
-
Integrated physiology, transcriptome and proteome analyses highlight the potential roles of multiple hormone-mediated signaling pathways involved in tapping panel dryness in rubber tree
作者：Yuan, Kun;He, Qiguang;Hu, Yiyu;Feng, Chengtian;Liu, Hui;Wang, Zhenhui;Wang, Xihao
关键词：Rubber tree; Tapping panel dryness; Endogenous hormones; Signaling pathways; Rubber biosynthesis
