Whole-genome sequencing and comparative genomic analyses of the medicinal fungus Sanguinoderma infundibulare in Ganodermataceae
文献类型： 外文期刊
第一作者： Fang, Yuxuan
作者： Fang, Yuxuan;Lv, Mengxue;Zhou, Miao;Sun, Yifei;Cui, Baokai;Wu, Dongmei;Gao, Neng;Ma, Chuangui;Sun, Yifei;Cui, Baokai
作者机构：
关键词： Sanguinoderma; Ganodermataceae; medicinal fungi; comparative genomic analyses; next-generation sequencing
期刊名称：G3-GENES GENOMES GENETICS （ 影响因子：2.6； 五年影响因子：3.0 ）
ISSN： 2160-1836
年卷期： 2024 年 14 卷 4 期
页码：
收录情况： SCI
摘要： Sanguinoderma infundibulare is a newly discovered species of Ganodermataceae known to have high medicinal and ecological values. In this study, the whole-genome sequencing and comparative genomic analyses were conducted to further understand Ganodermataceae's genomic structural and functional characteristics. Using the Illumina NovaSeq and PacBio Sequel platforms, 88 scaffolds were assembled to obtain a 48.99-Mb high-quality genome of S. infundibulare. A total of 14,146 protein-coding genes were annotated in the whole genome, with 98.6% of complete benchmarking universal single-copy orthologs (BUSCO) scores. Comparative genomic analyses were conducted among S. infundibulare, Sanguinoderma rugosum, Ganoderma lucidum, and Ganoderma sinense to determine their intergeneric differences. The 4 species were found to share 4,011 orthogroups, and 24 specific gene families were detected in the genus Sanguinoderma. The gene families associated with carbohydrate esterase in S. infundibulare were significantly abundant, which was reported to be involved in hemicellulose degradation. One specific gene family in Sanguinoderma was annotated with siroheme synthase, which may be related to the typical characteristics of fresh pore surface changing to blood red when bruised. This study enriched the available genome data for the genus Sanguinoderma, elucidated the differences between Ganoderma and Sanguinoderma, and provided insights into the characteristics of the genome structure and function of S. infundibulare.
分类号：
- 相关文献
作者其他论文 更多>>
-
New species, new records and common species of Pluteus sect. Celluloderma from northern China
作者：Qi, Zheng-Xiang;Qian, Ke-Qing;Yue, Lei;Wang, Li-Bo;Guo, Di-Zhe;Zhang, Bo;Li, Yu;Wu, Dong-Mei;Gao, Neng
关键词：Line drawings; morphology; phylogeny; wood-rotting fungi
-
Metal-Binding Protein TaGlo1 Improves Fungal Resistance to Arsenite (AsIII) and Methylarsenite (MAsIII) in Paddy Soil
作者：Li, Lijuan;Sun, Yifei;He, Chao;Zeng, Xibai;Su, Shiming;Tian, Jian;Guan, Feifei;Huang, Ke;Xue, Ximei;Chen, Jian;Zhang, Tuo
关键词：rice rhizosphere; cysteine residues; detoxification; site-directed mutation; isothermal titration calorimetry
-
Accurate mapping of rapeseed fields in the initial flowering stage using Sentinel-2 satellite images and convolutional neural networks
作者：Sun, Yifei;Chang, Hongcai;Ding, Guiling;Guo, Zhanbao;Huang, Jiaxing;Sun, Yifei;Chang, Hongcai;Ding, Guiling;Guo, Zhanbao;Huang, Jiaxing;Hao, Zhenbang;Yang, Jialin;Yang, Jialin;He, Xi;Huang, Jiaxing
关键词：Agroecosystems; Sentinel-2; Rapeseed field; Semantic segmentation; Remote sensing; Pollinator
-
Selective utilization of organic carbon molecules promotes arsenic methylation by increasing methyltransferase activity in arsM-harboring microbes of paddy soils
作者：Li, Lingyi;Zhang, Nan;Zhang, Yang;Sun, Yifei;Zeng, Xibai;Su, Shiming;Zhang, Yahe;Shi, Quan;Huo, Lijuan
关键词：CHON molecules; Methylation efficiency; O/C; Rice straw; SAM
-
Water-fertilizer regulation drives microorganisms to promote iron, nitrogen and manganese cycling: A solution for arsenic and cadmium pollution in paddy soils
作者：Zhang, Ting;Sun, Yifei;Zhang, Nan;Shan, Hong;Zeng, Xibai;Su, Shiming;Zhang, Ting;Colinet, Gilles;Parikh, Sanjai J.;Garland, Gina;Huo, Lijuan
关键词：Arsenic; Cadmium; Water regime; Fertilizer regime; Microbial process
-
Ceriporiopsis tianshanensis (Polyporales, Agaricomycetes) and Sidera tianshanensis (Hymenochaetales, Agaricomycetes), two new species of wood-inhabiting fungi from Xinjiang, Northwest China
作者：Xu, Tai-Min;Sun, Yi-Fei;Liu, Shun;Song, Chang-Ge;Cui, Bao-Kai;Gao, Neng;Wu, Dong-Mei
关键词：macrofungi; phylogeny; polyporoid fungi; taxonomy; white-rot fungi
-
Determination and Chemotaxonomic Analysis of Lanostane Triterpenoids in the Mycelia of Ganoderma spp. Using Ultra-performance Liquid Chromatography-Tandem Mass Spectrometry (I)
作者：Yue, Yawen;Zhou, Shuai;Zhang, Jingsong;Feng, Na;Yue, Yawen;Han, Wei;Cheng, Chilu;Teng, Liming;Cui, Baokai;Dai, Yucheng
关键词：Ganodermataceae; Polyporales; ganoderic acids; static fermentation; quantitative analysis; chemotaxonomy
