Effects of agricultural inputs on soil virome-associated antibiotic resistance and virulence: A focus on manure, microplastic and pesticide
文献类型： 外文期刊
第一作者： Li, Hua
作者： Li, Hua;Li, Wen-Jing;Huang, Fu-Yi;Li, Wen-Jing;Ghaly, Timothy M.;Tetu, Sasha G.;Li, Hong-Zhe
作者机构：
关键词： Soil virome; Agricultural activities; Antibiotic resistance genes; Virulence factor genes
期刊名称：JOURNAL OF HAZARDOUS MATERIALS （ 影响因子：11.3； 五年影响因子：12.4 ）
ISSN： 0304-3894
年卷期： 2025 年 496 卷
页码：
收录情况： SCI
摘要： Soil viruses are increasingly recognized as crucial mediators of horizontal gene transfer, yet their role in disseminating antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) under agricultural disturbances remains poorly understood. Here, we characterized the viromes and associated ARGs and VFGs in agricultural soils treated with low- and high-dose manures, microplastics, and pesticides. Using metagenomic sequencing coupled with advanced viral identification tools, we found that manure fertilization markedly altered viral community composition and increased viral diversity. Manure also enhanced the abundance of ARGs and VFGs in viromes by 2.0-9.8-fold and 2.0-8.1-fold, respectively, while microplastics and pesticides had limited impacts. Additionally, gene pathways related to human diseases and environmental adaptation were enriched in soil viromes treated with manures and high-dose pesticides. Virus-host prediction revealed that Actinomycetia dominated bacterial hosts of both ARG- and VFG-carrying viruses, with some VFG-carrying viruses linked to potential human pathogens, e.g., Escherichia albertii and Klebsiella pneumoniae. Co-occurrence network analysis indicated that these disturbances strengthened connections between bacteria, viruses, and ARGs (or VFGs). Our study provides a comprehensive profile of viromes and associated risks in agricultural soil under three disturbances, highlighting the role of viruses in spread of antibiotic resistance and pathogenic risks in agricultural soil.
分类号：
- 相关文献
作者其他论文 更多>>
-
Insect residual streams supplement improves chili pepper growth: Insights into the role of rhizosphere soil microbiome and metabolome
作者：Zhou, Hanghai;Zheng, Xusong;Shen, Qi;Yao, Xiaohong;Sun, Hong;Wang, Xin;Wu, Yifei;Tang, Jiangwu;Zhu, Zhigang;Yang, Chenghu;Li, Hua;Liu, Yuxue;Jiang, Lijia;Zhang, Chunfang
关键词：Insect farming; Insect residual stream; Chili pepper; Plant growth; Rhizosphere microbial community; Metabolic profile
-
Enhanced virulence of Acinetobacter johnsonii at low temperatures induces acute immune response and systemic infection in American bullfrogs (Aquarana catesbeiana)
作者：Lin, Han;Sun, Jingyang;Li, Hua;Chen, Kesong;Qin, Zhendong;Jiang, Biao;Li, Wei;Su, Youlu;Lin, Li;Liu, Chun;Wang, Qing;Wang, Qing
关键词：Cold stress; Virulence genes; Amphibian disease; Immune response; Systemic infection
-
Identification, Characterization, and Expression Analysis of CD79A and CD79B in the Sichuan Taimen (Hucho bleekeri)
作者：Chen, Yeyu;Yang, Huanchao;Wu, Xiaoyun;Liu, Zhao;Chen, Yanling;Wei, Qinyao;Lin, Jue;Yu, Yi;Tu, Quanyu;Li, Hua;Chen, Yeyu;Yang, Huanchao;Wu, Xiaoyun;Liu, Zhao;Chen, Yanling;Lin, Jue;Yu, Yi;Tu, Quanyu;Li, Hua;Wei, Qinyao
关键词：
-
Soil heterogeneity influences the biotoxicity of photoaged tire wear particles in Eisenia fetida: A comparative assessment
作者：Zhou, Hanghai;Wang, Xin;Sun, Hong;Li, Hua;Yao, Xiaohong;Wang, Yuan;Jin, Junwei;Tang, Jiangwu;Wu, Zhou;Li, Yongfu;Zhou, Jianjiang;Jiang, Lijia;Zhang, Chunfang
关键词：Tire wear particle; Photoaging; Earthworm; Soil heterogeneity; Oxidative damage
-
The Pilot Study on the Histological and Ultrastructural Characteristics of Major Immune Organs (Spleen, Head Kidney, and Trunk Kidney) and Analysis of Pathological Features in Sichuan Taimen (Hucho bleekeri)
作者：Wei, Qinyao;Li, Hua;Chen, Yeyu;Liu, Zhao;Chen, Yanling;Yu, Yi;Tu, Quanyu;Liu, Guiliang;Du, Jun;Yang, Huanchao;Wei, Qinyao;Song, Zhaobin;Li, Hua;Chen, Yeyu;Liu, Zhao;Chen, Yanling;Yu, Yi;Tu, Quanyu;Liu, Guiliang;Du, Jun;Yang, Huanchao
关键词：head kidney; histology;
Hucho bleekeri -
Seasonal occurrence of brown marmorated stink bug and its impact in organic and conventional kiwifruit orchards in north-western China
作者：Zhang, Jin-Ping;Chen, Ju-Hong;Li, Wen-Jing;Tian, Xin-Yue;Zhang, Feng;Zhang, Jin-Ping;Zhang, Feng;Liu, Zhan-De;Zhang, Jin-Ping;Alavi, Maryam;Avila, Gonzalo A.;Shi, Shu-Sen
关键词：
Halyomorpha halys ; phenology; injury level;Actinidia chinensis ; pest management -
Fungal diversity notes 1919-2016: taxonomic and phylogenetic contributions to fungal taxa
作者：Cao, Bin;Wang, Long;Li, Jia-Xin;Han, Xi-Xi;Yang, Wen-Qiang;Wang, Shi-Hui;He, Mao-Qiang;Zhao, Rui-Lin;Cao, Bin;Phurbu, Dorji;Zhao, Rui-Lin;Ralaiveloarisoa, Anna;Liimatainen, Kare;Niskanen, Tuula;Liimatainen, Kare;Niskanen, Tuula;Ramirez-Cruz, Virginia;Cortes-Perez, Alonso;Guzman-Davalos, Laura;Castro-Jauregui, Oscar;Bradshaw, Alexander James;Dentinger, Bryn T. M.;Dentinger, Bryn T. M.;Ramirez-Guillen, Florencia;Villalobos-Arambula, Alma Rosa;da Silva, Paula Santos;Day, Rory;Davoodian, Naveed;Lebel, Teresa;May, Tom W.;Lebel, Teresa;Castellano, Michael;Toome, Merje;Vasey, Jack;Hofer, Katharina;Thangavel, Rajaram;Braithwaite, Mark;Braithwaite, Lewis;Dutta, Arun Kumar;Chattopadhyay, Pinaki;Roy, Niranjan;Tanti, Bhaben;Biswas, Pinky Rani;Roy, Niranjan;Arumugam, Elangovan;Kezo, Kezhocuyi;Kaliyaperumal, Malarvizhi;Murugadoss, Ramesh;Ji, Jing-Xin;Kakishima, Makoto;Cooper, Jerry;Nuytinck, Jorinde;Lagaet, Phaedra;De Lange, Ruben;Verbeken, Annemieke;Tondeleir, Lowie;Nuytinck, Jorinde;Luo, Zong-Long;Wang, Wen-Peng;Zhang, Xian;Li, Hua;Xiong, Yin-Ru;Wu, Na;Shu, Yong-Xin;Zhao, Hai-Jun;Liao, Chun-Fang;Yang, Hong-De;Jayawardena, Ruvishika Shehali;Thongklang, Naritsada;Han, Xi-Xi;Hyde, Kevin D.;Zhang, Xian;Wen, Ting-Chi;Zhang, Xian;Wen, Ting-Chi;Jia, Ao-Li;Fan, Xin-Lei;Jiang, Ning;Jiao, Ning;Zhang, Ying;Manawasinghe, Ishara S.;Li, Hua;Xiong, Yin-Ru;Zhou, Tao;Tan, Qing-Ling;Li, Hua;Xiong, Yin-Ru;Wu, Na;Shu, Yong-Xin;Zhao, Hai-Jun;Liao, Chun-Fang;Yang, Hong-De;Jayawardena, Ruvishika Shehali;Thongklang, Naritsada;Han, Xi-Xi;Hoshino, Tamotsu;Hoshino, Tamotsu;Manz, Cathrin;Hampe, Felix;Zhao, Chang-Lin;Yang, Yang;Zhang, Gui-Qing;Dai, Dong-Qin;Tomsovsky, Michal;Denchev, Teodor T.;Denchev, Cvetomir M.;Denchev, Teodor T.;Denchev, Cvetomir M.;Kemler, Martin;Leveille-Bourret, Etienne;Kemler, Martin;Chen, Yan-Peng;Maharachchikumbura, Sajeewa S. N.;Liu, Jian-Kui;Du, Hong-Zhi;Wu, Na;Feng, Zi-Xuan;Wang, Qi-Ming;Wan, Shan-Ping;Yu, Fu-Qiang;Yu, Fu-Qiang;Du, Hong-Zhi;Du, Hong-Zhi;Hu, Hong-Li;Su, Ji-Yu;Wang, Zong-Hua;Hu, Yan-Ping;Yu, Hao;Wang, Zong-Hua;Wang, Jing;Yang, Yi-Hua;Dong, Wei;Shu, Yong-Xin;Zhao, Hai-Jun;Liao, Chun-Fang;Doilom, Mingkwan;Wang, Chao-Qun;Xia, Wen-Xiao;Li, Guo-Jie;Suwannarach, Nakarin;Senwanna, Chanokned;Suwannarach, Nakarin;Senwanna, Chanokned;Gafforov, Yusufjon;Gafforov, Yusufjon;Flakus, Adam;Suchan, Tomasz;Rodriguez-Flakus, Pamela;Plata, Oscar;Tamang, Juna;Acharya, Krishnendu;Tiendrebeogo, Assiata;Somda, Irenee;Decock, Cony;Tiendrebeogo, Assiata;Legreve, Anne;Yang, Yu;Xiao, Yuan-Pin;Zhou, Xian-Zhi;Li, Jia-Xin;Zhao, Rui-Lin;Wang, Shi-Hui;He, Mao-Qiang
关键词：Ascomycota; Basidiomycota; New combination; New genus; New name; New record; New species
