The complete genome of hydrocarbon-degrading Pseudoalteromonas sp NJ289 and its phylogenetic relationship

文献类型: 外文期刊

第一作者: Liu Fangming

作者: Liu Fangming;Xiao Tian;Liu Fangming;Liu Fangming;Wang Yibin;Qu Changfeng;Zheng Zhou;Miao Jinlai;Xu Hua

作者机构:

关键词: Pseudoalteromonas; low temperature; environmental adaptability; sequencing; phylogenetic tree

期刊名称:ACTA OCEANOLOGICA SINICA ( 影响因子:1.431; 五年影响因子:1.445 )

ISSN: 0253-505X

年卷期: 2017 年 36 卷 2 期

页码:

收录情况: SCI

摘要: Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencing platform. The assembly yielded three contigs representing two chromosomes and one plasmid with the sizes of 3.2 Mb, 636 kb and 1.8 kb, respectively. The G+C contents of genome were 40.83% and included 3 589 ORFs. Functional annotation indicated some potential roles in enzymatic activity and environmental adaptability. This study may help for understanding the population diverse, evolutionary ecology and the microbial interaction.

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