文献类型： 外文期刊
第一作者： Wang, Lin
作者： Wang, Lin;Sui, Changhai;Wang, Ying;Guo, Jia
作者机构：
关键词： Paphiopedilum wardii; Illumina sequencing; chloroplast genome; MITObim
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）
ISSN： 2380-2359
年卷期： 2018 年 3 卷 2 期
页码：
收录情况： SCI
摘要： Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis, which becomes a popular tool for population and phylogeny in a recent report. Here, the complete chloroplast genome of the Paphiopedilum wardii has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 169,820bp in size and comprises a pair of inverted repeat (IR) regions of 33,641bp each, a large single-copy (LSC) region of 98,872bp and a small single-copy (SSC) region of 3666bp. The total GC content is 33.8%, while the corresponding values of the IR regions, LSC, and SSC and are 38.7%, 31.7% and 26.7%, respectively. The chloroplast genome contains 151 genes, including 91 protein-coding genes, eight ribosomal RNA genes and 52 transfer RNA genes. Two genes (ndhA and ndhB) are pseudogenized or lost in its cpDNA. The maximum-likelihood phylogenetic analysis showed a close relationship with P. armeniacum in Orchidaceae. Our findings provide useful information for phylogenetic and evolutionary research of Paphiopedilum species.
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