Sequencing and characterization the complete chloroplast genome of the potato, Solanum tuberosum L.
文献类型： 外文期刊
第一作者： Zhao, Chunbo
作者： Zhao, Chunbo;Chen, Shanshan;Li, Dongting;Meng, Jingjing;Tang, Yufan;Song, Shuyao;Sun, Kai
作者机构：
关键词： Solanum tuberosum L.; potato; Solanaceae; chloroplast genome; phylogenetic relationship analysis
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）
ISSN： 2380-2359
年卷期： 2019 年 4 卷 1 期
页码：
收录情况： SCI
摘要： Potato (Solanum tuberosum L.) is one of the top five staple foods in China. It has high nutritional value, adaptability, and large yield. It is the third most important food crop in the world, second only to wheat and rice. In this study, we obtained the complete chloroplast genome sequence of Potato using BGISEQ-500 sequencing. Its chloroplast genome size has 155,732 bp, containing a large single copy region (85,736 bp), a small single copy region (18,384 bp), and a pair of IR regions (25,596 bp). The overall GC contents of the chloroplast genome were 37.8%. This circular genome contains 130 annotated genes, including 85 protein-coding genes, 37 tRNAs, and eight rRNAs. Maximum likelihood phylogenetic analysis the phylogenetic relationship analysis using Neighbour-Joining (NJ) method showed that Potato (S. tuberosum L.) is much closely related to Solanum bulbocastanum. This complete chloroplast genomes can be subsequently used for the genetic breeding and useful to study the evolutionary processes in Solanaceae.
分类号：
- 相关文献
作者其他论文 更多>>
-
A novel, low-cost, and efficient separation strategy based on S-doped C3N4 for the analysis of PCDD/Fs and dioxin-like PCBs
作者：Luo, Yanli;Luo, Yanli;Liu, Chengbin;Wang, Xianli;Zhang, Qicai;Yao, Chunxia;Huang, Di;Liu, Xing;Lu, Yangyang;Song, Wei;Chen, Shanshan;Zhou, Jiaxin;Rao, Qinxiong;Song, Weiguo;Liu, Chengbin;Wang, Xianli;Zhang, Qicai;Yao, Chunxia;Huang, Di;Liu, Xing;Lu, Yangyang;Song, Wei;Chen, Shanshan;Zhou, Jiaxin;Rao, Qinxiong;Liu, Chengbin;Wang, Xianli;Zhang, Qicai;Yao, Chunxia;Huang, Di;Liu, Xing;Lu, Yangyang;Song, Wei;Chen, Shanshan;Zhou, Jiaxin;Rao, Qinxiong
关键词：PCDD/Fs; Dl-PCBs; Carbon nitride; Separation; Analysis
-
Transcriptome profiling of aerial and subterranean peanut pod development
作者：Peng, Zhenying;Jia, Kai-Hua;Meng, Jingjing;Wang, Jianguo;Zhang, Jialei;Li, Xinguo;Wan, Shubo
关键词：
-
Occurrence and Risk Assessment of Pesticides, Phthalates, and Heavy Metal Residues in Vegetables from Hydroponic and Conventional Cultivation
作者：Chen, Shanshan;Yao, Chunxia;Zhou, Jiaxin;Song, Weiguo;Ma, Haiyao;Jin, Jing;Kai, Zhenpeng
关键词：risk assessment; hydroponic; vegetable; pesticide residues; phthalates; heavy metals
-
Adaptive responses and metabolic strategies of Novosphingobium sp. ES2-1-17β-estradiol analyzed through integration of genomic and proteomic approaches
作者：Li, Shunyao;Yang, Wei;Mo, Jingjing;Wang, Yubing;Li, Yucheng;Gao, Yanzheng;Sun, Kai;Lu, Chao
关键词：Microbial degradation; Steroid estrogens; Novosphingobium; Molecular mechanisms; Genomics and proteomics
-
Research advances in the identification of regulatory mechanisms of surfactin production by Bacillus: a review
作者：Qiao, Junqing;Zhang, Rongsheng;Liu, Youzhou;Liu, Yongfeng;Borriss, Rainer;Sun, Kai;Chen, Xijun
关键词：Bacillus; Surfactin; Regulatory mechanism
-
Comparative metabolomics reveals complex metabolic shifts associated with nitrogen-induced color development in mature pepper fruit
作者：Zhang, Lu;Zhang, Fen;He, Xuanyi;Dong, Yuehua;Sun, Kai;Liu, Shunli;Wang, Xiaozhong;Yang, Huaiyu;Zhang, Wei;Lakshmanan, Prakash;Chen, Xinping;Deng, Yan;Zhang, Lu;Zhang, Fen;He, Xuanyi;Dong, Yuehua;Sun, Kai;Liu, Shunli;Wang, Xiaozhong;Chen, Xinping;Deng, Yan;Yang, Huaiyu;Zhang, Wei;Lakshmanan, Prakash;Lakshmanan, Prakash;Lakshmanan, Prakash
关键词：pepper; fruit color; nitrogen; carotenoids; flavonoids; metabolome
-
Phenotypic detection of flax plants based on improved Flax-YOLOv5
作者：Sun, Kai;Liu, Chengzhong;Han, Junying;Zhang, Jianping;Qi, Yanni
关键词：flax; YOLOv5; target detection; phenotypic data; variety breeding
