Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)
文献类型: 外文期刊
第一作者: Tu, Xiong-De
作者: Tu, Xiong-De;Liu, Ding-Kun;Xu, Shao-Wei;Zhou, Cheng-Yuan;Gao, Xu-Yong;Zeng, Meng-Yao;Zhang, Sai;Chen, Jin-Liao;Ma, Liang;Zhou, Zhuang;Chen, Shi-Pin;Liu, Zhong-Jian;Lan, Si-Ren;Li, Ming-He;Tu, Xiong-De;Liu, Ding-Kun;Zhang, Sai;Ma, Liang;Huang, Ming-Zhong;Chen, Shi-Pin;Liu, Zhong-Jian;Lan, Si-Ren;Li, Ming-He;Zhou, Zhuang;Huang, Ming-Zhong
作者机构:
关键词: Cranichideae; Mycoheterotrophic orchids; NDH complex; Phylogenetic analysis; Plastome
期刊名称:MOLECULAR PHYLOGENETICS AND EVOLUTION ( 影响因子:4.286; 五年影响因子:4.492 )
ISSN: 1055-7903
年卷期: 2021 年 164 卷
页码:
收录情况: SCI
摘要: Goodyerinae are one of phylogenetically unresolved groups of Orchidaceae. The lack of resolution achieved through the analyses of previous molecular sequences from one or a few markers has long confounded phylogenetic estimation and generic delimitation. Here, we present large-scale phylogenomic data to compare the plastome structure of the two main clades (Goodyera and Cheirostylis) in this subtribe and further adopt two strategies, combining plastid coding sequences and the whole plastome, to investigate phylogenetic relationships. A total of 46 species in 16 genera were sampled, including 39 species in 15 genera sequenced in this study. The plastomes of heterotrophic species are not drastically reduced in overall size, but display a pattern congruent with a loss of photosynthetic function. The plastomes of autotrophic species ranged from 147 to 165 kb and encoded from 132 to 137 genes. Three unusual structural features were detected: a 1.0-kb inversion in the large single-copy region of Goodyera schlechtendaliana; the loss and/or pseudogenization of ndh genes only in two species, Cheirostylis chinensis and C. montana; and the expansion of inverted repeat regions and contraction of small single-copy region in Hetaeria oblongifolia. Phylogenomic analyses provided improved resolution for phylogenetic relationships. All genera were recovered as monophyletic, except for Goodyera and Hetaeria, which were each recovered as non-monophyletic. Nomenclatural changes are needed until the broader sampling and biparental inherited markers. This study provides a phylogenetic framework of Goodyerinae and insight into plastome evolution of Orchidaceae.
分类号:
- 相关文献
作者其他论文 更多>>
-
Overexpression of rice OsNRT1.1A/OsNPF6.3 enhanced the nitrogen use efficiency of wheat under low nitrogen conditions
作者:Wang, Huanhuan;Xie, Zhencheng;Yang, Yuxin;Dai, Hongyong;Xia, Chuan;Kong, Xiuying;Zhang, Lichao;Wang, Wei;Shi, Feng;Ma, Liang;Sui, Zhifeng
关键词:Grain yield per plant; Low nitrogen tolerance; Nitrogen use efficiency; OsNRT1.1A; Wheat (Triticum aestivum)
-
GhVOZ1-AVP1 module positively regulates salt tolerance in upland cotton (Gossypium hirsutum L.)
作者:Lian, Boying;Guo, Xiaohao;Yu, Shuxun;Wu, Aimin;Wu, Hongmei;Lv, Xiaoyan;Sun, Mengxi;Li, Yiran;An, Li;Wei, Fei;Fu, Xiaokang;Lu, Jianhua;Wang, Hantao;Ma, Liang;Wei, Hengling;Lu, Zhengying;Li, Shiyun
关键词:Upland cotton; GhVOZ1; GhAVP1; Salt stress
-
GhMAPK3, a mitogen-activated protein kinase, enhance salt and drought tolerance in cotton ( Gossypium hirsutum )
作者:Jian, Hongliang;Sadau, Salisu Bello;Wei, Fei;Ma, Liang;Fu, Xiaokang;Zhang, Nan;Lu, Jianhua;Wang, Hantao;Wei, Hengling;Lu, Zhengying;Yin, Guo;Ahmad, Adeel;Ahmad, Adeel;Wei, Hengling
关键词:MAPK; Gossypium hirsutum; Drought stress; Salt stress
-
Dendrobium tetrapterum, a cryptic species in the D. lindleyi alliance (Orchidaceae; Dendrobiinae): evidence from morphological and molecular data
作者:Wei, Chun-yi;Li, Ru-yi;Wu, Yu-wei;Li, Ming-he;Huang, Ming-zhong;Li, Ming-he
关键词:Asian orchids; cryptic species; Dendrobium phylogenetics; Malaxideae
-
An odorant receptor mediates the avoidance of Plutella xylostella against parasitoid
作者:Liu, Yipeng;Zhang, Sai;Cao, Song;Liu, Yang;Wang, Guirong;Liu, Yipeng;Wang, Guirong;Liu, Yipeng;Jacquin-Joly, Emmanuelle;Zhou, Qiong
关键词:Plutella xylostella; Odorant receptor; Heptanal; Avoidance behavior; Parasitoid wasp
-
Effects of improved amino acid balance diet on lysine mammary utilization, whole body protein turnover and muscle protein breakdown on lactating sows
作者:Zhang, Sai;Moore, Julie;Trottier, Nathalie L.;Zhang, Sai;Marini, Juan C.;Mohammad, Mahmoud A.;Marini, Juan C.;Mohammad, Mahmoud A.;Mavangira, Vengai;Claude, Andrew;Trottier, Nathalie L.
关键词:Amino acid; Efficiency; Lactating sows; Protein breakdown; Protein turnover; Reduced protein diet
-
Wolfberry genome database: integrated genomic datasets for studying molecular biology
作者:Cao, You-Long;Li, Yan-Long;Fan, Yun-Fang;Luo, Qing;Zhao, Jian-Hua;Yin, Yue;An, Wei;Shi, Zhi-Gang;Cao, You-Long;Li, Yan-Long;Fan, Yun-Fang;Luo, Qing;Zhao, Jian-Hua;Yin, Yue;An, Wei;Shi, Zhi-Gang;Chen, You-Yi;Li, Chung-, I;Lin, Shao-Ting;Tsai, Wen-Chieh;Lin, Shao-Ting;Tsai, Wen-Chieh;Lee, Bing-Ru;Hsieh, Chun-Lin;Wu, Wei-Sheng;Hsiao, Yu-Yun;Tsai, Wen-Chieh;Chow, Chi-Nga;Chang, Wen-Chi;Tsai, Wen-Chieh;Huang, Chun-Lin;Chang, Wei-Hung;Chang, Wei-Hung;Liu, Zhong-Jian;Liu, Zhong-Jian;Liu, Zhong-Jian;Liu, Zhong-Jian;Tsai, Wen-Chieh;Tsai, Wen-Chieh
关键词:wolfberry; Lycium barbarum; wolfberry genome database (WGDB); user-friendly; genomics; transcriptomics