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• Effects of rumen metabolite butyric acid on bovine skeletal muscle satellite cells proliferation, apoptosis and transcriptional states during myogenic differentiation

  作者：Wang, Xiao-Wei;Ding, Yan-Ling;Li, Cheng-Long;Shi, Yuan-Gang;Kang, Xiao-Long;Wang, Xiao-Wei;Ma, Qing;Liu, George E.;Li, Cong-Jun

  关键词：Butyrate; Bovine skeletal muscle satellite cells; Proliferation; Differentiation; Apoptosis; Differentially expressed genes

• Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis)

  作者：Si, Jingfang;Dai, Dongmei;Dhakal, Aashish;Omar, Abdullah Ibne;Zhang, Yi;Gorkhali, Neena Amatya;Sapkota, Saroj;Wang, Mingshan;Wang, Sheng;Wu, Dong-Dong;Kadel, Ram Chandra;Sadaula, Amir;Faruque, Md Omar;Sari, Eka Meutia;Ashari, Hidayat;Dagong, Muhammad Ihsan Andi;Yindee, Marnoch;Rushdi, Hossam E.;Amin, Ahmed;Radwan, Mohamed A.;Elregalaty, Hussein;Pham, Lan Doan;Hulugalla, W. M. M. P.;Silva, G. L. L. Pradeepa;Zheng, Wei;Mansoor, Shahid;Ali, Muhammad Basil;Mansoor, Shahid;Vahidi, Farhad;Al-Bayatti, Sahar Ahmed;Pauciullo, Alfredo;Lenstra, Johannes A.;Barker, J. Stuart F.;Fang, Lingzhao;Han, Jianlin

  关键词：buffalo; CSN2; MC1R; population genomics; selection; single-cell RNA-seq

• Genetic advancements and future directions in ruminant livestock breeding: from reference genomes to multiomics innovations

  作者：Xu, Songsong;Liu, Jiaxin;Feng, Xueyan;Yu, Yi;Yang, Ji;Wang, Yachun;Yu, Ying;Li, Menghua;Xu, Songsong;Liu, Jiaxin;Feng, Xueyan;Yu, Yi;Yang, Ji;Wang, Yachun;Yu, Ying;Li, Menghua;Xu, Songsong;Liu, Jiaxin;Feng, Xueyan;Yu, Yi;Yang, Ji;Wang, Yachun;Yu, Ying;Li, Menghua;Akhatayeva, Zhanerke;Badaoui, Bouabid;Esmailizadeh, Ali;Kantanen, Juha;Amills, Marcel;Amills, Marcel;Lenstra, Johannes A.;Johansson, Anna M.;Coltman, David W.;Coltman, David W.;Liu, George E.;Curik, Ino;Curik, Ino;Orozco-terWengel, Pablo;Paiva, Samuel R.;Zinovieva, Natalia A.;Zhang, Linwei;Liu, Zhihong;Li, Menghua

  关键词：ruminant livestock; genomics; domestication; genetic improvement

• A resource of longitudinal RNA-seq data of Holstein cow rumen, duodenum, and colon epithelial cells during the lactation cycle

  作者：Gao, Yahui;Liu, George E.;Li, Cong-jun;Baldwin, Ransom L.;Gao, Yahui;Ma, Li;Gao, Yahui

  关键词：Holstein cattle; Gene expression; Gastrointestinal tract tissues; Lactation; Functional genome; Molecular genetics

• Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs

  作者：Xu, Zhiting;Lin, Qing;Cai, Xiaodian;Zhong, Zhanming;Teng, Jinyan;Zeng, Haonan;Gao, Yahui;Wei, Chen;Zhou, Jun;Zhang, Wenjing;Zhang, Xiaoke;Shi, Shaolei;Wu, Jun;Diao, Shuqi;Liu, Yuqiang;Pan, Xiangchun;Feng, Xueyan;Liu, Ruiqi;Su, Zhanqin;Chang, Chengjie;Zhu, Qianghui;Wu, Yuwei;Zhang, Hao;Yuan, Xiaolong;Li, Jiaqi;Zhang, Zhe;Li, Bingjie;Gao, Yahui;Liu, George E.;Gao, Yahui;Ma, Li;Cai, Zexi;Bai, Zhonghao;Su, Guosheng;Sahana, Goutam;Lund, Mogens Sando;Fang, Lingzhao;Wang, Xiaoqing;Shi, Liangyu;Zhao, Fuping;Wang, Xue;Wang, Yi;Zhang, Zipeng;Ding, Xiangdong;Lin, Yu;Tang, Guoqing;Li, Mingzhou;Li, Xuewei;Liu, Shuli;Yin, Hongwei;Bai, Lijing;Li, Kui;Zhou, Zhongyin;Wang, Qishan;Pan, Yuchun;Xu, Zhong;Peng, Xianwen;Mei, Shuqi;Mo, Delin;Liu, Xiaohong;Chen, Yaosheng;Liu, Yang;Xiang, Ruidong;Xiang, Ruidong;Shen, Xia;Shen, Xia;Shen, Xia;Li, Pinghua;Huang, Ruihua;Li, Pinghua;Huang, Ruihua;Ballester, Maria;Crespo-Piazuelo, Daniel;Amills, Marcel;Clop, Alex;Amills, Marcel;Karlskov-Mortensen, Peter;Fredholm, Merete;Zhang, Qin;Zhao, Yunxiang

  关键词：pig; meta-GWAS; PigGTEx; molQTL; complex traits

• A multi-tissue and -breed catalogue of chromatin conformations and their implications in gene regulation in pigs

  作者：Yin, Hongwei;Zhao, Qianyi;Yang, Liu;Yi, Guoqiang;Yao, Wenye;Bai, Lijing;Fang, Lingzhao;Yao, Wenye

  关键词：Pig; TADs; Gene expression; Biological functions

• Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs

  作者：Yin, Hongwei;Yang, Liu;Zhao, Qianyi;Yao, Wenye;Bai, Lijing;Li, Kui;Fang, Lingzhao;Yao, Wenye;Groenen, Martien A. M.;Madsen, Ole;Teng, Jinyan;Gao, Yahui;Xu, Zhiting;Lin, Qing;Diao, Shuqi;Li, Jiaqi;Zhang, Zhe;Zhou, Huaijun;Guan, Dailu;Liu, Xiaohong;Zhao, Fuping;Zhou, Zhongyin;Wang, Qishan

  关键词：Genomic variants; Gene expression and splicing; Complex traits; Non-coding regions; Epigenome