Complete Genome Sequence Resource for Cercospora apii Causing Leaf Spot of Celery

文献类型： 外文期刊

第一作者： Yang, Lijuan

作者： Yang, Lijuan;Gao, Wei;Zhang, Chunxiang;Huo, Jianfei;Wang, Yong;Gao, Guoxun;Wu, Feng

作者机构：

关键词： celery; Cercospora apii; genome; leaf spot

期刊名称：MOLECULAR PLANT-MICROBE INTERACTIONS （ 影响因子：3.5； 五年影响因子：4.1 ）

ISSN： 0894-0282

年卷期： 2023 年

页码：

收录情况： SCI

摘要： Cercospora apii is an important seedborne pathogenic fungus causing severe Cercospora leaf spot of celery worldwide. Here, we first present a complete genome assembly of C. apii QCYBC from celery, based on Illumina paired-end and PacBio long-read sequencing data. The high-quality genome assembly contains 34 scaffolds with a 34.81 Mb genome size, 330 interspersed repeat genes, 114 noncoding RNAs, and 12,631 protein-coding genes. The benchmarking universal single-copy ortholog (BUSCO) analysis indicated that 98.2% of the BUSCOs were complete, whereas 0.3, 0.7, and 1.1% were duplicated, fragmented, and missing, respectively. Based on annotation, 508 carbohydrate-active enzymes, 243 cytochromes P450 enzymes, 1,639 translocators, 1,358 transmembrane proteins, and 1,146 virulence genes were identified. This genome sequence provides a valuable reference for future studies to improve understanding of the C. apii-celery pathosystem.Copyright (c) 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

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