Development and use of novel SSR markers for molecular genetic diversity in Italian millet (Setaria italica L.)

文献类型: 外文期刊

第一作者: Zhao, Weiguo

作者: Zhao, Weiguo;Kwon, Soon-Wook;Park, Yong-Jin;Zhao, Weiguo;Lee, Gi-An;Ma, Kyung-Ho;Lee, Myung-Chul;Kwon, Soon-Wook;Park, Yong-Jin

作者机构:

关键词: Genetic diversity;Heterozygosity;Italian millet;Simple sequence repeat (SSR) markers;Setaria italica

期刊名称:GENES & GENOMICS ( 影响因子:1.839; 五年影响因子:1.329 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: Italian millet is a commercially important grain crop. Nineteen polymorphic simple sequence repeat (SSR) markers, developed through construction of an SSR-enriched library from genomic DNA of Italian millet (Setaria italica L., P. Beauv.), were used for assessment of molecular genetic diversity against 40 accessions of S. italica. In total, 85 alleles were detected, with an average of 4.5 alleles per locus. The average gene diversity and polymorphism information content (PIC) values were 0.412 and 0.376, ranging from 0.02 to 0.88 and from 0.02 to 0.87, respectively. Values for observed (Ho) and expected (He) heterozygosities ranged from 0 to 0.73 and from 0.03 to 0.89, respectively. Nine loci deviated from Hardy-Weinberg equilibrium. The mean similarity coefficient among accessions was 0.6593. Based on the UPGMA algorithm, six different groups were successfully identified. In this clustering analysis, all Korean accessions grouped in one cluster, indicating that Korean accessions are genetically quite distinct from other introduced accessions. These newly developed microsatellite markers should be very useful tools for several genetic studies, including an assessment of diversity and population structure in Italian millet.

分类号: Q

  • 相关文献

[1]Taxonomic status and genetic diversity of cultured largemouth bass Micropterus salmoides in China. Bai, Junjie,Quan, Yingchun,Liang, Suxian,Lutz-Carrillo, Dijar J.,Liang, Suxian.

[2]Genetic diversity of 'Cadidatus Liberibacter solanacearum' strains in the United States and Mexico revealed by simple sequence repeat markers. Lin, Hong,Islam, Md Sajedul,Bai, Yang,Lan, Suque,Bai, Yang,Wen, Amin,Gudmestad, Neil C.,Lan, Suque. 2012

[3]Assessment of genetic diversity and population structure of mung bean (Vigna radiata) germplasm using EST-based and genomic SSR markers. Chen, Honglin,Qiao, Ling,Wang, Lida,Wang, Suhua,Cheng, Xuzhen,Qiao, Ling,Blair, Matthew Wohlgemuth.

[4]Development and characterization of 12 microsatellite markers for Johnius belengerii. Ma, Chunyan,Ma, Hongyu,Ma, Lingbo,Shen, Anglv,Gao, Lujiao.

[5]Evaluation of genetic identity and variation in cultivars of Pyrus pyrifolia (Burm.f.) Nakai from China using microsatellite markers. Cao, Y.,Yang, J.,Zhang, S.,Cao, Y.,Tian, L.,Gao, Y..

[6]Polymorphic microsatellite differences among four cultured populations of two selected tilapia strains. Li, Dayu,Yang, Hong,Zou, Zhiying,Xiao, Wei,Zhu, Jingling,Luo, Yongju.

[7]Comparison of SSRs and SNPs in assessment of genetic relatedness in maize. Yang, Xiaohong,Li, Jiansheng,Yan, Jianbing,Xu, Yunbi,Shah, Trushar,Li, Huihui,Han, Zhenhai,Yan, Jianbing.

[8]DEVELOPMENT AND CHARACTERIZATION OF 21 EST-DERIVED MICROSATELLITE MARKERS IN VICIA FABA (FAVA BEAN). Ma, Yu,Yang, Tao,Guan, Jianping,Wang, Shumin,Wang, Haifei,Sun, Xuelian,Zong, Xuxiao.

[9]Development of 12 polymorphic EST-SSR for endangered fish, Hucho taimen (Pallas). Jun, Wang,You-Yi, Kuang,Guang-Xiang, Tong,Jia-Sheng, Yin.

[10]GENERATION AND CHARACTERIZATION OF 11 NOVEL EST DERIVED MICROSATELLITES FROM VICIA FABA (FABACEAE). Gong, Ya-Ming,Xu, Sheng-Chun,Hu, Qi-Zan,Zhang, Gu-Wen,Ding, Ju,Mao, Wei-Hua,Li, Ze-Yun.

[11]Genetic variability assessed by microsatellites in the breeding populations of the shrimp Penaeus (Fenneropenaeus) chinensis in China. Zhang, Tianshi,Kong, Jie,Wang, Weiji,Wang, Qingyin,Zhang, Tianshi.

[12]IDENTIFICATION AND CHARACTERIZATION OF 43 NOVEL POLYMORPHIC EST-SSR MARKERS FOR ARUM LILY, ZANTEDESCHIA AETHIOPICA (ARACEAE). Wei, Zun-Zheng,Xiong, Min,Wang, Xian,Zhou, Di,Luo, Lai-Bo,Zhang, Hua-Li. 2012

[13]The effect of low water content on seed longevity. Hu, CL,Zhang, YL,Tao, M,Hu, XR,Jiang, CY. 1998

[14]Development of EST-SSR in foxtail millet (Setaria italica). Jia, Xiao-Ping,Shi, Yun-Su,Song, Yan-Cun,Wang, Guo-Ying,Wang, Tian-Yu,Li, Yu. 2007

[15]Identification of primary trisomics and other aneuploids in foxtail millet. Wang, R,Gao, J,Liang, GH. 1999

[16]Cloning of Plastid Acetyl-CoA Carboxylase cDNA from Setaria italica and Sequence Analysis of Graminicide Target Site. Zhao, HJ,Wang, JH,Gao, P,Gu, RL,Zhang, JQ,Wang, TY,Wang, GY.

[17]Construction and application of EST library from Setaria italica in response to dehydration stress. Zhang, Jinpeng,Liu, Tingsong,Fu, Junjie,Zhu, Yun,Jia, Jinping,Zheng, Jun,Zhao, Yinhe,Zhang, Ying,Wang, Guoying.

[18]Development of highly polymorphic simple sequence repeat markers using genome-wide microsatellite variant analysis in Foxtail millet [Setaria italica (L.) P. Beauv.]. Zhang, Shuo,Tang, Chanjuan,Li, Jing,Yang, Lifang,Qie, Lufeng,Fan, Xingke,Li, Lin,Zhao, Meicheng,Liu, Xiaotong,Chai, Yang,Zhang, Xue,Wang, Hailong,Li, Yingtao,Li, Wen,Zhi, Hui,Jia, Guanqing,Diao, Xianmin,Zhao, Qiang,Zhang, Ning,Li, Jing,Qie, Lufeng,Fan, Xingke,Li, Lin,Zhang, Xue,Wang, Hailong,Li, Yingtao,Diao, Xianmin,Li, Wen. 2014

[19]Penalties in yield and yield associated traits caused by stem lodging at different developmental stages in summer and spring foxtail millet cultivars. Tian, Bohong,Zhang, Lixin,Liu, Yanli,Luan, Surong,Zhang, Ling,Li, Hongjie. 2018

[20]Overexpression of a PLD alpha 1 gene from Setaria italica enhances the sensitivity of Arabidopsis to abscisic acid and improves its drought tolerance. Zhang, Jinpeng,Xie, Yuanhong,Wang, Guoying,Peng, Yunling,Peng, Yunling,Cao, Gaoyi,Liu, Xihui,Lu, Minhui. 2010

作者其他论文 更多>>