Identification of type I microsatellite markers associated with genes and ESTs in Scylla paramamosain

文献类型： 外文期刊

第一作者： Ma, Hongyu

作者： Ma, Hongyu;Ma, Chunyan;Ma, Lingbo

作者机构：

关键词： Scylla paramamosain;Microsatellites;Gene and EST;Cross-species amplification

期刊名称：BIOCHEMICAL SYSTEMATICS AND ECOLOGY （ 影响因子：1.381； 五年影响因子：1.351 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： In this study, Microsatellites were screened from genes and ESTs of Scylla paramamosain and the related species Scylla serrata. Eighteen polymorphic loci were detected, with a total of 106 alleles. The observed and expected heterozygosity per locus ranged from 0.08 to 1.00, and from 0.08 to 0.88. Polymorphism information content (PIC) showed that 12 loci were high informative (PIC > 0.5). Two loci were found to deviate significantly from Hardy–Weinberg equilibrium after Bonferroni correction (P < 0.0028). Significant linkage disequilibrium was detected between loci Scpa-ALF-SSR and Scpa-SSR03 after Bonferroni correction (P < 0.0003). Cross-species amplification of these 18 microsatellite markers showed that most of them could give the expected products in three other species: S. serrata, Scylla tranquebarica and Scylla olivacea. This study will be useful for construction of genetic linkage maps, mapping of quantitative trait loci (QTL), and analysis of comparative genome in S. paramamosain and therelated taxa.

分类号： Q5

  • 相关文献

[1]Eight polymorphic microsatellite markers developed in the green leaf bug, Lygus lucorum Meyer-Dur (Hemiptera : Miridae). Liu, Yu-Di,Yang, Zhong-Cheng,Wu, Kong-Ming. 2007

[2]Isolation via enrichment and characterization of 14 dinucleotide microsatellite loci in one catfish, Glyptosternum maculatum and cross-amplification in other related taxa. Guo, Baoying,Xie, Congxin,Li, Hongjing,Shan, Lei,Wang, Huanling,Huo, Bin,Zhou, Qing,Zhang, Yan.

[3]High genetic diversity and low differentiation in mud crab (Scylla paramamosain) along the southeastern coast of China revealed by microsatellite markers. Ma, Hongyu,Cui, Haiyu,Ma, Chunyan,Ma, Lingbo.

[4]Development of New Microsatellite DNA Markers from Apostichopus japonicus and Their Cross-Species Application in Parastichopus parvimensis and Pathallus mollis. Liao, Meijie,Wang, Yingeng,Rong, Xiaojun,Zhang, Zheng,Li, Bin,Wang, Lan,Chen, Guiping. 2011

[5]Isolation of novel microsatellite markers from Paralichthys lethostigma (Paralichthyidae) and their cross-species application in Pleuronectiformes. Xu, Y. -J.,Liao, M. -J.,Wang, Y. -G.,Liu, Z. -C.,Qin, P.,Zhang, Z.,Rong, X. -J.,Liu, X. -Z.. 2013

[6]Development and characterization of 60 novel EST-SSR markers in half-smooth tongue sole Cynoglossus semilaevis. Sha, Z-X.,Luo, X-H.,Liao, X-L.,Wang, Q-L.,Chen, S-L.,Wang, S-L.,Wang, S-L.. 2011

[7]Isolation and characterization of 31 polymorphic microsatellite markers in barfin flounder (Verasper moseri) and the cross-species amplification in spotted halibut (Verasper variegatus). Ma, Hongyu,Chen, Songlin,Ma, Hongyu. 2009

[8]Polymorphic microsatellite markers in the false kelpfish Sebastiscus marmoratus: isolation, characterization, and cross-species amplification. Liu, H. B.,Liu, H. B.,Liu, S. F.,Ye, J. B.,Yuan, Y. J.,Zhuang, Z. M.,Yuan, Y. J.,Ding, S. X.. 2014

[9]Development of thirty-four novel polymorphic microsatellite markers in Coilia ectenes (Clupeiformes: Engraulidae) and cross-species amplification in two closely related taxa. Chen, Fang,Zeng, Liyan,Cheng, Qiqun,Chen, Fang. 2012

[10]Development of 20 Microsatellite Markers for Solenocera crassicornis and Their Cross-Species Application in Solenocera melantho. Liu, Shufang,Liu, Hongbo,Yuan, Yanjiao,Dai, Fangqun,Zhuang, Zhimeng,Liu, Hongbo,Lin, Lin,Yuan, Yanjiao. 2012

[11]Isolation and characterization of polymorphic microsatellite loci from an EST-library of red sea bream (Chrysophrys major) and cross-species amplification. Chen, SL,Liu, YG,Xu, MY,Li, J. 2005

[12]Development of thirty-five novel polymorphic microsatellite markers in Pseudosciaena polyactis (Perciformes:Sciaenidae) and cross-species amplification in closely related species, Pseudosciaena crocea. Chen, Wenming,Cheng, Qiqun,Chen, Wenming.

[13]Cross-species applicability of chicken microsatellite markers for investigation of genetic diversity in Indian duck (Anas platyrhynchos) populations. Mukesh,Sathyakumar, S.,Mukesh,Javed, Ruheena,Javed, Ruheena,Gaur, Uma,Han Jianlin. 2011

[14]Analysis of microsatellites in major crops assessed by computational and experimental approaches. Gao, LF,Tang, JF,Li, HW,Jia, JZ. 2003

[15]Thirteen microsatellite loci for Laodelphax striatellus and cross amplification in related taxa. Liu, Yudi,Hou, Maolin,Zhang, Baoqin. 2014

[16]Isolation and characterization of polymorphic microsatellite loci from a repeat-enriched genomic library of stone flounder (Kareius bicoloratus) and cross-species amplification. Tian, Yong-Sheng,Miao, Gui-Dong,Shao, Chang-Wei,Liao, Xiao-Lin,Chen, Song-Lin.

[17]Development of 12 polymorphic microsatellite markers in Coilia ectenes Jordan and Seale, 1905 (Clupeiformes: Engraulidae) and cross-species amplification in Coilia mystus Linnaeus, 1758. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi.

[18]Isolation and characterization of polymorphic microsatellite loci from a dinucleotide-enriched genomic library of starry flounder (Platichthys stellatus) and cross-species amplification. Miao, Guidong,Ma, Hongyu,Liao, Xiaolin,Chen, Songlin,Miao, Guidong,Shao, Changwei,Ma, Hongyu.

[19]Characterization and expression analysis of the prophenoloxidase activating factor from the mud crab Scylla paramamosain. Wang, J.,Jiang, K. J.,Zhang, F. Y.,Song, W.,Zhao, M.,Wei, H. Q.,Meng, Y. Y.,Ma, L. B.,Wang, J.,Zhao, M.,Wei, H. Q.,Meng, Y. Y.. 2015

[20]Multiplex immune-related genes expression analysis response to bacterial challenge in mud crab, Scylla paramamosain. Zhang, Fengying,Jiang, Keji,Sun, Manman,Zhang, Dan,Ma, Lingbo. 2013

作者其他论文 更多>>

微信小程序