Comparison of transcriptome under red and blue light culture of Saccharina japonica (Phaeophyceae)

文献类型： 外文期刊

第一作者： Wang, Wen-Jun

作者： Wang, Wen-Jun;Wang, Fei-Jiu;Sun, Xiu-Tao;Liu, Fu-Li;Liang, Zhou-Rui

作者机构：

关键词： Carbon fixation;Differential gene expression;High throughput sequencing;Photoreceptor;Photosynthesis;Pigment biosynthesis

期刊名称：PLANTA （ 影响因子：4.116； 五年影响因子：4.316 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Saccharina japonica is one of the most important economic seaweeds. Several aspects such as photosynthesis in Saccharina lives are affected by blue light, the predominant light spectrum in the habitat. In this study, transcriptome profiling of S. japonica by next generation sequencing technology generated 55,102 qualified transcripts and 40. 5 % transcripts were assigned to functional annotation. Expression of a large proportion of genes has been previously reported to be regulated by blue light, taking dark as control. However, by comparison among white, blue and red light, the significantly differentially expressed gene tags (DEGs) accounted for only 6. 75 % of the identified sequences. It indicated that light-regulated gene expression in kelps is not a specific blue-light response. Unexpectedly, red light had more extensive effects on the transcriptomic activity than blue light did, since the most (68. 4 %) DEGs were red light-regulated and only 17. 5 % were specifically regulated by blue light. Some of the DEGs with the highest mRNA levels under blue light are not blue light-upregulated but red light-downregulated. The extensive regulation on gene expression under red light together with the abundant presence of phytochrome-like protein gene tags in S. japonica indicated their significant roles in the lives of brown algae. By highlighting the photosynthetic metabolism, blue light is more efficient than red light in triggering the pigment biosynthesis, light reaction and carbon fixation, revealing a molecular basis for rapid growth of kelps, since most of the time blue light is predominant in their habitat.

分类号： Q94

  • 相关文献

[1]Comparative Transcriptional Profiling and Preliminary Study on Heterosis Mechanism of Super-Hybrid Rice. Song, Gui-Sheng,Zhai, Hong-Li,Peng, Yong-Gang,Zhang, Lei,Wei, Gang,Xiao, Yu-Guo,Wang, Lili,Chen, Yue-Jun,Wu, Bin,Chen, Bin,Zhang, Yu,Chen, Hua,Feng, Xiu-Jing,Gong, Wan-Kui,Liu, Yao,Yin, Zhi-Jie,Xu, Hong-Lin,Wei, Xiao-Li,Zhao, Xiao-Ling,Zhu, Zhen,Song, Gui-Sheng,Zhai, Hong-Li,Peng, Yong-Gang,Zhang, Lei,Wei, Gang,Xiao, Yu-Guo,Wang, Lili,Chen, Yue-Jun,Wu, Bin,Chen, Bin,Zhang, Yu,Chen, Hua,Feng, Xiu-Jing,Gong, Wan-Kui,Liu, Yao,Yin, Zhi-Jie,Xu, Hong-Lin,Wei, Xiao-Li,Zhao, Xiao-Ling,Lu, Cong-Ming,Zhu, Zhen,Wei, Gang,Chen, Xiao-Ying,Lu, Cong-Ming,Wang, Feng,Liu, Guo-Zhen,Ouwerkerk, Pieter B. F.,Hankemeier, Thomas,Reijmers, Theo,van der Heijden, Rob,van der Greef, Jan,Wang, Mei,van der Greef, Jan,Wang, Mei,van der Greef, Jan. 2010

[2]Photosynthetic capacity of the capsule wall and its contribution to carbon fixation and seed yield in castor (Ricinus communis L.). Zhang, Yang,Liu, Aizhong,Mulpuri, Sujatha,Zhang, Yang.

[3]Transcriptome profiling of peanut gynophores revealed global reprogramming of gene expression during early pod development in darkness. Xia, Han,Zhao, Chuanzhi,Hou, Lei,Li, Aiqin,Zhao, Shuzhen,Bi, Yuping,An, Jing,Wan, Shubo,Wang, Xingjun,Bi, Yuping,Wan, Shubo,Wang, Xingjun,Bi, Yuping,An, Jing,Zhao, Yanxiu,Wang, Xingjun. 2013

[4]Ectomycorrhization of Tricholoma matsutake with Quercus aquifolioides affects the endophytic microbial community of host plant. Xiong, Chuan,Jin, Xin,Huang, Wenli,Li, Qiang,Li, Xiaolin. 2018

[5]Deep Sequencing Analysis of miRNA Expression in Breast Muscle of Fast-Growing and Slow-Growing Broilers. Ouyang, Hongjia,He, Xiaomei,Li, Guihuan,Xu, Haiping,Jia, Xinzheng,Nie, Qinghua,Zhang, Xiquan,Ouyang, Hongjia,He, Xiaomei,Li, Guihuan,Xu, Haiping,Jia, Xinzheng,Nie, Qinghua,Zhang, Xiquan,Ouyang, Hongjia,He, Xiaomei,Li, Guihuan,Xu, Haiping,Jia, Xinzheng,Nie, Qinghua,Zhang, Xiquan. 2015

[6]Genome-Wide Characterization of Rice Black Streaked Dwarf Virus-Responsive MicroRNAs in Rice Leaves and Roots by Small RNA and Degradome Sequencing. Sun, Zongtao,He, Yuqing,Li, Junmin,Wang, Xu,Chen, Jianping,He, Yuqing.

[7]Blue-light-dependent interaction of cryptochrome 1 with SPA1 defines a dynamic signaling mechanism. He, Sheng-Bo,Zhang, Yan-Chun,Zhang, Jing-Yi,Jia, Kun-Peng,Li, Ling,Yang, Hong-Quan,Zhu, Dan-Meng,Sun, Shu-Xia. 2011

[8]Molecular cloning and functional analysis of one ZEITLUPE homolog GmZTL3 in soybean. Zhang, Xiao-Mei,Fu, Yong-Fu,Xue, Zheng-Gang,Chen, Xin-Jian,Lei, Chen-Fang,Chen, Xin-Jian.

[9]Growth and nutritional properties of lettuce affected by different alternating intervals of red and blue LED irradiation. Chen, Xiao-li,Song, Wen-pin,Wang, Li-chun,Guo, Wen-zhong,Xue, Xu-zhang,Chen, Xiao-li,Yang, Qi-chang.

[10]Protective Effect of Proanthocyanidins from Sea Buckthorn (Hippophae Rhamnoides L.) Seed against Visible Light-Induced Retinal Degeneration in Vivo. Wang, Yong,Zhao, Liang,Huo, Yazhen,Zhou, Feng,Lu, Feng,Yang, Xue,Guo, Xiaoxuan,Ji, Baoping,Wu, Wei,Chen, Peng,Deng, Qianchun,Chen, Peng,Deng, Qianchun. 2016

[11]Protective Effect of Total Flavones from Hippophae rhamnoides L. against Visible Light-Induced Retinal Degeneration in Pigmented Rabbits. Wang, Yong,Zhao, Liang,Wang, Ou,Guo, Xiaoxuan,Lu, Feng,Yang, Xue,Ji, Baoping,Huang, Fenghong,Deng, Qianchun,Huang, Fenghong,Deng, Qianchun,Zhang, Di.

[12]Retinoprotective Effects of Bilberry Anthocyanins via Antioxidant, Anti-Inflammatory, and Anti-Apoptotic Mechanisms in a Visible Light-Induced Retinal Degeneration Model in Pigmented Rabbits. Wang, Yong,Zhao, Liang,Lu, Feng,Yang, Xue,Ji, Baoping,Deng, Qianchun,Huang, Fenghong,Deng, Qianchun,Huang, Fenghong.

[13]Relationship Between Gene Differential Expression of Leaves in Full Opening Flower Stages of Hybrids & Their Parents and Heterosis in Pest-resistant Cotton. XING Chao-Zhu,ZHAO Yun-Lei,YU Shu-Xun,ZHANG Xian-Long,GUO Li-Ping,WANG Hai-Lin. 2006

[14]Comparison of gene expression patterns between porcine cumulus-oocyte complexes and naked oocytes. Zhu, G. Y.,Feng, S. T.,Li, J. T.,Mu, Y. L.,Pan, D. K.,Guo, B. R.. 2007

[15]Strand-specific RNA-Seq transcriptome analysis of genotypes with and without low-phosphorus tolerance provides novel insights into phosphorus-use efficiency in maize. Du, Qingguo,Wang, Kai,Xu, Cheng,Zou, Cheng,Xie, Chuanxiao,Xu, Yunbi,Li, Wen-Xue. 2016

[16]Estimating Plasmodiophora brassicae gene expression in lines of B. rapa by RT-PCR. Wu, Li-yan,Li, Shi-kai,Gong, Ya-ju,Zhong, Li,He, Jiang-Ming,Siemens, Johannes,Ludwig-Mueller, Jutta. 2012

[17]Comparative Transcriptome Analysis Revealed Genes Commonly Responsive to Varied Nitrate Stress in Leaves of Tibetan Hulless Barley. Zeng, Xingquan,Wang, Yulin,Xu, Qijun,Yuan, Hongjun,Tang, Yawei,Nyima, Tashi,Wei, Zexiu,Zeng, Xingquan,Wang, Yulin,Xu, Qijun,Yuan, Hongjun,Tang, Yawei,Nyima, Tashi,Wei, Zexiu,Zeng, Xingquan,Wang, Yulin,Xu, Qijun,Yuan, Hongjun,Tang, Yawei,Qin, Cheng,Bai, Lijun. 2016

[18]Molecular characterization and expression analysis of the porcine caveolin-3 gene. Zhu, Zhengmao,Li, Yong,Mo, Delin,Li, Kui,Zhao, Shuhong.

[19]Molecular cloning and characterization of cotton cDNAs expressed in developing fiber cells. Guang-Rong ZHAO,Jin-Yuan LIU,Xiong-Ming DU. 2001

[20]Transcriptome analysis reveals the effect of pre-harvest CPPU treatment on the volatile compounds emitted by kiwifruit stored at room temperature. Luo, Jing,Guo, Linlin,Huang, Yunan,Wang, Chao,Qiao, Chengkui,Pang, Rongli,Li, Jun,Pang, Tao,Wang, Ruiping,Xie, Hanzhong,Fang, Jinbao. 2017

作者其他论文 更多>>

微信小程序