Research progress in allele-specific expression and its regulatory mechanisms

文献类型: 外文期刊

第一作者: Gaur, Uma

作者: Gaur, Uma;Mei, Shuqi;Liu, Guisheng;Gaur, Uma;Mei, Shuqi;Liu, Guisheng;Li, Kui

作者机构:

关键词: Phenotypic variation;Allele-specific expression;Regulatory mechanism;Genetic and epigenetic factors

期刊名称:JOURNAL OF APPLIED GENETICS ( 影响因子:3.24; 五年影响因子:2.756 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: Although the majority of genes are expressed equally from both alleles, some genes are differentially expressed. Organisms possess characteristics to preferentially express a particular allele under regulatory factors, which is termed allele-specific expression (ASE). It is one of the important genetic factors that lead to phenotypic variation and can be used to identify the variance of gene regulation factors. ASE indicates mechanisms such as DNA methylation, histone modifications, and non-coding RNAs function. Here, we review a broad survey of progress in ASE studies, and what this simple yet very effective approach can offer in functional genomics, and possible implications toward our better understanding of the underlying mechanisms of complex traits.

分类号: Q1

  • 相关文献

[1]Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes. Sun, Honghe,Zhang, Guoyu,Guo, Shaogui,Ren, Yi,Zhang, Jie,Zhang, Haiying,Gong, Guoyi,Jia, Zhangcai,Zhang, Fan,Tian, Jiaxing,Li, Haizhen,Xu, Yong,Sun, Honghe,Wu, Shan,Jiao, Chen,Fei, Zhangjun,Lucas, William J.,Doyle, Jeff J.,Fei, Zhangjun. 2017

[2]Transcriptome profiling and comparison of maize ear heterosis during the spikelet and floret differentiation stages. Hu, Xiaojiao,Wang, Hongwu,Diao, Xizhou,Liu, Zhifang,Li, Kun,Wu, Yujin,Liang, Qianjin,Wang, Hui,Huang, Changling. 2016

[3]Transcript characteristic of myostatin in sheep fibroblasts. Lu, Jian,Ding, Jiatong,Li, Bichun,Lu, Jian,Zhang, Xiaoning,Zhao, Fuping,Zhou, Xinlei,Zhang, Li,Wei, Caihong,Du, Lixin,Ren, Hangxing,Sheng, Xihui,Li, Shangang.

[4]Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.). Wang, Wen-Sheng,Pan, Ya-Jiao,Zhao, Xiu-Qin,Zhu, Ling-Hua,Fu, Bin-Ying,Li, Zhi-Kang,Wang, Wen-Sheng,Dwivedi, D.,Ali, J.,Li, Zhi-Kang.

[5]Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens. Cui, Huanxian,Zheng, Maiqing,Zhao, Guiping,Liu, Ranran,Wen, Jie,Cui, Huanxian,Zheng, Maiqing,Zhao, Guiping,Liu, Ranran,Wen, Jie. 2018

[6]Insights from the Cold Transcriptome and Metabolome of Dendrobium officinale: Global Reprogramming of Metabolic and Gene Regulation Networks during Cold Acclimation. Wu, Zhi-Gang,Jiang, Wu,Chen, Song-Lin,Tao, Zheng-Ming,Jiang, Cheng-Xi,Chen, Song-Lin,Mantri, Nitin. 2016

[7]Isolation and characterization of the carotenoid biosynthetic genes LCYB, LCYE and CHXB from strawberry and their relation to carotenoid accumulation. Zhu, Haisheng,Chen, Mindong,Wen, Qingfang,Li, Yongping,Zhu, Haisheng,Chen, Mindong,Wen, Qingfang,Li, Yongping.

[8]Cloning of the strawberry xanthophyll cycle genes VDE and ZEP and characterization of their responses to high light stress. Zhu, Haisheng,Chen, Mindong,Bin, Wang,Wen, Qingfang.

[9]QTL mapping for fiber quality traits across multiple generations and environments in upland cotton. Fu-Ding Sun,Jian-Hong Zhang,Shu-Fang Wang,Wan-Kui Gong,Yu-Zhen Shi,Ai-Ying Liu,Jun-Wen Li,Ju-Wu Gong,Hai-Hong Shang,You-Lu Yuan.

[10]Molecular mapping of quantitative trait loci for kernel morphology traits in a non-1BL.1RS x 1BL.1RS wheat cross. Yonggui Xiao,Shengmei He,Jun Yan,Yong Zhang,Yelun Zhang,Yunpeng Wu,Xianchun Xia,Jichun Tian,Wanquan Ji,Zhonghu He.

[11]Phenotypic Variation and Genetic Diversity in the Collections of Erianthus Arundinaceus (Retz.) Jesw. Li, Yang-Rui,Liu, Xi-Hui,Song, Huan-Zhong,Zhang, Ge-Min,Duan, Wei-Xing,Zhang, Rong-Hua,Li, Yang-Rui. 2017

[12]Mapping quantitative trait loci for sheath blight resistance in rice using double haploid population. Xu, Qun,Yuan, XiaoPing,Yu, HanYong,Wang, YiPing,Tang, ShengXiang,Wei, XingHua.

[13]Genetic analysis for main length ratio associated with morphological traits in Japanese flounder Paralichthys olivaceus. Liu, Y. X.,Yang, R. Q.,Sun, Z. H.,Wang, Y. F..

[14]Unconditional and Conditional Quantitative Trait Loci Mapping for Plant Height in Nonheading Chinese Cabbage. Yi, Ying,Hou, Xilin,Geng, Jianfeng,Zhang, Xiao Wei,Yi, Ying,Hou, Xilin.

[15]Genetic effects of introgression genomic components from Sea Island cotton (Gossypium barbadense L.) on fiber related traits in upland cotton (G. hirsutum L.). Wang, Furong,Gong, Yongchao,Zhang, Chuanyun,Liu, Guodong,Wang, Liuming,Xu, Zhenzhen,Zhang, Jun.

[16]Phenotypic variation analysis and QTL mapping for cotton (Gossypium hirsutum L.) fiber quality grown in different cotton-producing regions. Wang, Furong,Qiao, Qinghua,Yuan, Zhecheng,Fan, Shoujin,Wang, Furong,Zhang, Chuanyun,Liu, Guodong,Chen, Yu,Zhang, Jingxia,Zhang, Jun.

[17]A core collection and mini core collection of Oryza sativa L. in China. Zhang, Hongliang,Zhang, Dongling,Wang, Meixing,Sun, Junli,Qi, Yongwen,Li, Jinjie,Li, Zichao,Wei, Xinghua,Tang, Shengxiang,Han, Longzhi,Qiu, Zongen.

[18]Compare of Phenotypic Variation with the Polymorphism of One Coagulation Related Gene Locus in Buffalo Kappa-Casein. Lin, Bo,Yang, Bingzhuang,Li, Ling,Yan, Tang,Long, Haoru,Ren, Daxi,Zeng, Qingkun. 2013

[19]The Analysis of Physiological Variations in M-2 Generation of Solanum melongena L. Mutagenized by Ethyl Methane Sulfonate. Xiao Xi-ou,Lin Wenqiu,Li Wei,Gao Xiaoming,Lv Lingling,Ma Feiyue,Liu Yuge,Xiao Xi-ou,Lin Wenqiu,Li Wei,Gao Xiaoming,Lv Lingling,Ma Feiyue,Liu Yuge. 2017

[20]Mapping quantitative trait loci for quality factors in an inter-class cross of US and Chinese wheat. Bai, Guihua,Sun, Xiaochun,Marza, Felix,Carver, Brett F.,Ma, Hongxiang.

作者其他论文 更多>>
  • EXPERT expands prime editing efficiency and range of large fragment edits

    作者:Xiong, Youcai;Su, Yinyu;He, Ruigao;Han, Xiaosong;Li, Sheng;Liu, Minghuan;Xi, Xiaoning;Liu, Zijia;Wang, Heng;Xie, Shengsong;Xu, Xuewen;Li, Xinyun;Zhao, Shuhong;Ruan, Jinxue;Xiong, Youcai;Su, Yinyu;He, Ruigao;Han, Xiaosong;Li, Sheng;Liu, Minghuan;Xi, Xiaoning;Liu, Zijia;Wang, Heng;Xie, Shengsong;Xu, Xuewen;Li, Xinyun;Zhao, Shuhong;Ruan, Jinxue;Han, Xiaosong;Zhao, Shuhong;Xie, Shengsong;Xu, Xuewen;Li, Xinyun;Zhao, Shuhong;Xie, Shengsong;Xu, Xuewen;Li, Xinyun;Zhao, Shuhong;Li, Kui;Zhang, Jifeng;Xu, Jie

    关键词:

  • Genome-Wide Silencer Screening Reveals Key Silencer Modulating Reprogramming Efficiency in Mouse Induced Pluripotent Stem Cells

    作者:Zhu, Xiusheng;Huang, Lei;Li, Guoli;Deng, Biao;Wang, Xiaoxiao;Yang, Hu;Zhang, Yuanyuan;Wen, Qiuhan;Wang, Chao;Zhang, Jingshu;Li, Kui;Liu, Yuwen;Deng, Biao;Deng, Biao;Zhao, Yunxiang

    关键词:cis-regulatory elements; high-throughput; iPSCs; silencer; Ss-STARR-seq

  • Transcriptome analysis reveals no obvious unintended effects in the spleen of CRISPR/Cas9-mediated CD163 and pAPN double-knockout pigs

    作者:Liu, Zhi-Guo;Wang, Nan;Wang, Wan-Jie;Chi, Shun-Shun;Nie, Yu-Xin;Yuan, Mao-Sha;Sun, Ya-Ru;Mu, Yu-Lian;Li, Kui;Wang, Nan;Huang, Lei;Chi, Shun-Shun;Li, Kui

    关键词:CD163; pAPN; Double-knockout; Gene editing; Pig; Spleen; Unintended effects; Transcriptomics

  • Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs

    作者:Xu, Zhiting;Lin, Qing;Cai, Xiaodian;Zhong, Zhanming;Teng, Jinyan;Zeng, Haonan;Gao, Yahui;Wei, Chen;Zhou, Jun;Zhang, Wenjing;Zhang, Xiaoke;Shi, Shaolei;Wu, Jun;Diao, Shuqi;Liu, Yuqiang;Pan, Xiangchun;Feng, Xueyan;Liu, Ruiqi;Su, Zhanqin;Chang, Chengjie;Zhu, Qianghui;Wu, Yuwei;Zhang, Hao;Yuan, Xiaolong;Li, Jiaqi;Zhang, Zhe;Li, Bingjie;Gao, Yahui;Liu, George E.;Gao, Yahui;Ma, Li;Cai, Zexi;Bai, Zhonghao;Su, Guosheng;Sahana, Goutam;Lund, Mogens Sando;Fang, Lingzhao;Wang, Xiaoqing;Shi, Liangyu;Zhao, Fuping;Wang, Xue;Wang, Yi;Zhang, Zipeng;Ding, Xiangdong;Lin, Yu;Tang, Guoqing;Li, Mingzhou;Li, Xuewei;Liu, Shuli;Yin, Hongwei;Bai, Lijing;Li, Kui;Zhou, Zhongyin;Wang, Qishan;Pan, Yuchun;Xu, Zhong;Peng, Xianwen;Mei, Shuqi;Mo, Delin;Liu, Xiaohong;Chen, Yaosheng;Liu, Yang;Xiang, Ruidong;Xiang, Ruidong;Shen, Xia;Shen, Xia;Shen, Xia;Li, Pinghua;Huang, Ruihua;Li, Pinghua;Huang, Ruihua;Ballester, Maria;Crespo-Piazuelo, Daniel;Amills, Marcel;Clop, Alex;Amills, Marcel;Karlskov-Mortensen, Peter;Fredholm, Merete;Zhang, Qin;Zhao, Yunxiang

    关键词:pig; meta-GWAS; PigGTEx; molQTL; complex traits

  • Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs

    作者:Yin, Hongwei;Yang, Liu;Zhao, Qianyi;Yao, Wenye;Bai, Lijing;Li, Kui;Fang, Lingzhao;Yao, Wenye;Groenen, Martien A. M.;Madsen, Ole;Teng, Jinyan;Gao, Yahui;Xu, Zhiting;Lin, Qing;Diao, Shuqi;Li, Jiaqi;Zhang, Zhe;Zhou, Huaijun;Guan, Dailu;Liu, Xiaohong;Zhao, Fuping;Zhou, Zhongyin;Wang, Qishan

    关键词:Genomic variants; Gene expression and splicing; Complex traits; Non-coding regions; Epigenome

  • DPImpute: A Genotype Imputation Framework for Ultra-Low Coverage Whole-Genome Sequencing and its Application in Genomic Selection

    作者:Zheng, Weigang;Wang, Chao;Dong, Wenjun;Liu, Yuwen;Zheng, Weigang;Wang, Chao;Dong, Wenjun;Liu, Yuwen;Zheng, Weigang;Ma, Wenlong;Chen, Zhilong;Wang, Chao;Sun, Tao;Dong, Wenjun;Zhang, Song;Tang, Zhonglin;Li, Kui;Liu, Yuwen;Zheng, Weigang;Ma, Wenlong;Chen, Zhilong;Wang, Chao;Sun, Tao;Dong, Wenjun;Zhang, Song;Tang, Zhonglin;Li, Kui;Liu, Yuwen;Zhang, Wenjing;Tang, Zhonglin;Liu, Yuwen;Zhao, Yunxiang

    关键词:breeding models; genetic screening of embryos; genomic selection; genotype imputation; single cell genotype

  • Innovation in Agricultural Water Pricing Systems in China Based on Irrigation Benefits

    作者:Feng, Xin;Li, Kui;Feng, Xin;Liu, Zixuan;Jiang, Wenlai;Liu, Yang

    关键词:irrigation benefit sharing coefficient; grain crops; C-D production function; sharing of agricultural water prices; sustainable agricultural development