Accuracy of short sequence repeats on single-parent parentage identification in Chinese shrimp Fenneropenaeus chinensis

文献类型： 外文期刊

第一作者： Zhang, Kai

作者： Zhang, Kai;Wang, Weiji;Kong, Jie;Luo, Kun;Jin, Xianshi;Zhang, Kai

作者机构：

关键词： Fenneropenaeus chinensis;Microsatellites;Parentage identification

期刊名称：AQUATIC BIOLOGY （ 影响因子：1.8； 五年影响因子：1.945 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Based on the parentage identification results using 4 polymorphic short sequence repeats (SSRs) with both parents known, we assessed the accuracy of parentage identification for a single known parent using the same 4 SSRs and 4 other additional SSRs for 2507 Chinese shrimp Fenneropenaeus chinensis recaptured from Jiaozhou Bay in a 'molecular marker recapture' program. We detected a high variability in the 4 SSR loci EN0033, RS0622, FCKR002, and FCKR013. The 4 polymorphic loci produced a >99.99% cumulative exclusion probability for both known parents. We identified 8 parentage relationships with a logarithm (base 10) of odds (LOD) score of >3.0. Similar results were obtained when the 4 additional SSR loci were included. The cumulative exclusion probability decreased to 99.42% for a single known parent using the old 4 SSR loci, which enabled detection of 30 and 44 parentage relationships with a >3.0 LOD score for known paternity and maternity, respectively. Inclusion of the additional 4 SSR loci raised, the cumulative exclusion probability to >99.99%. However, the number of parentage relationships detected with an LOD score of >3.0 was reduced to 8 for the groups with known paternity or maternity, similar to the result obtained with both parents known. In this study, the accuracy of single-parent parentage identification using SSR loci was confirmed. Authentic parentage identification with a single known parent should incorporate both the cumulative exclusion probability and LOD score. Our researchprovides an alternative method for parentage identification in Chinese shrimp.

分类号： Q17

  • 相关文献

[1]Analysis of tandem repeats in the genome of Chinese shrimp Fenneropenaeus chinensis. Kong, J,Gao, HA.

[2]Genetic differentiation in seven geographic populations of the fleshy shrimp Penaeus (Fenneropenaeus) chinensis based on microsatellite DNA. Meng, Xian Hong,Wang, Qing Yin,Liu, Ping,Kong, Jie,Meng, Xian Hong,Jang, In Kwon.

[3]Twelve new microsatellite markers for the Chinese shrimp Fenneropenaeus chinensis. Kong, Jie,Luan, Sheng,Gao, Huan,Yan, Binlun,Yu, Fei,Cai, Shengli.

[4]Genetic variability assessed by microsatellites in the breeding populations of the shrimp Penaeus (Fenneropenaeus) chinensis in China. Zhang, Tianshi,Kong, Jie,Wang, Weiji,Wang, Qingyin,Zhang, Tianshi.

[5]Genetic variation and evolutionary demography of Fenneropenaeus chinensis populations, as revealed by the analysis of mitochondrial control region sequences. Kong, Xiao Yu,Li, Yu Long,Li, Yu Long,Shi, Wei,Kong, Jie. 2010

[6]Construction of a genetic linkage map in Fenneropenaeus chinensis using SNP markers. Zhang, Jian-Yong,Wang, Wei-Ji,Kong, Jie,Wang, Qing-Yin. 2013

[7]Estimation of genetic parameters and breeding values in shrimp Fenneropenaeus chinensis using the REML/BLUP procedure. Zhang Tianshi,Kong Jie,Luan Sheng,Wang Qingyin,Luo Kun,Zhang Tianshi,Tian Yi. 2011

[8]Toxic dinoflagellate Alexandrium tamarense induces oxidative stress and apoptosis in hepatopancreas of shrimp (Fenneropenaeus chinensis). Liang Zhongxiu,Ren Hai,Liang Zhongxiu,Li Jian,Li Jitao,Tan Zhijun,Zhao Fazhen. 2014

[9]Lack of gender effect on the pharmacokinetics of oxytetracycline in Fenneropenaeus chinensis after intramuscular administration. Sun Ming,Sun Ming,Li Jian,Chang Zhiqiang,Zhao Fazhen,Li Jitao,Guo Wenting. 2015

[10]Nitrogen and phosphorus budget of a polyculture system of sea cucumber (Apostichopus japonicus), jellyfish (Rhopilema esculenta) and shrimp (Fenneropenaeus chinensis). Li Junwei,Dong Shuanglin,Gao Qinfeng,Li Junwei,Zhu Changbo. 2014

[11]Genetic parameters for cold tolerance and body weight of Chinese fleshy prawn, Fenneropenaeus chinensis. Li Wenjia,Luan Sheng,Luo Kun,Sui Juan,Lu Xia,Wang Qingyin,Kong Jie,Li Wenjia,Luan Sheng,Luo Kun,Sui Juan,Lu Xia,Wang Qingyin,Kong Jie. 2016

[12]Identification, cloning and characterization of an extracellular signal-regulated kinase (ERK) from Chinese shrimp, Fenneropenaeus chinensis. Li, Xupeng,Kong, Jie,Li, Xupeng,Meng, Xianhong,Kong, Jie,Luo, Kun,Luan, Sheng,Cao, Baoxiang,Liu, Ning,Pang, Jinfei,Shi, Xiaoli. 2013

[13]Expression profiles of the p38 MAPK signaling pathway from Chinese shrimp I Fenneropenaeus chinensis in response to viral and bacterial infections. He, Yuying,Liu, Ping,Li, Jian,Wang, Qingyin,He, Yuying,Li, Jian,Yao, Wanlong. 2018

[14]Pedigree tracing of Fenneropenaeus chinensis by microsatellite DNA markers genotyping. Dong Shirui,Kong Jie,Zhang Qingwen,Liu Ping,Meng Xianhong,Wang Rucai. 2006

[15]Polymorphic analysis of microsatellite DNA in wild populations of Chinese shrimp (Fenneropenaeus chinensis). Liu, P,Meng, XH,Kong, J,He, YY,Wang, QY. 2006

[16]Genetic evaluation of feed efficiency in the breeding population of Fenneropenaeus chinensis "Huanghai No. 2" using phenotypic, pedigree and genomic information. Dai, Ping,Luan, Sheng,Lu, Xia,Luo, Kun,Cao, Baoxiang,Meng, Xianhong,Kong, Jie,Dai, Ping,Luan, Sheng,Lu, Xia,Luo, Kun,Cao, Baoxiang,Meng, Xianhong,Kong, Jie. 2017

[17]Parentage determination of Chinese shrimp (Fenneropenaeus chinensis) based on microsatellite DNA markers. Dong, Shirui,Kong, Jie,Zhang, Tianshi,Meng, Xianhong,Wang, Rucai. 2006

[18]Heterosis of haernolymph analytes of two geographic populations in Chinese shrimp Fenneropenaeus chinensis. Yang, Cuihua,Kong, Jie,Wang, Qingyin,Liu, Qinghui,Tian, Yi,Luo, Kun. 2007

[19]Genetic variation analysis across six life periods in a natural population of the Chinese shrimp "Fenneropenaeus chinensis" in Bohai bay using SSR markers. Zhang, Kai,Wang, Weiji,Jin, Xianshi,Zhang, Kai,Xiao, Guangxia,Song, Wenping,Gao, Yan.

[20]The identification of microRNAs involved in the response of Chinese shrimp Fenneropenaeus chinensis to white spot syndrome virus infection. Li, Xupeng,Meng, Xianhong,Luo, Kun,Luan, Sheng,Shi, Xiaoli,Cao, Baoxiang,Kong, Jie,Luan, Sheng,Kong, Jie.

作者其他论文 更多>>

微信小程序