Development and characterisation of EST-SSR markers by transcriptome sequencing in taro (Colocasia esculenta (L.) Schoot)

文献类型: 外文期刊

第一作者: Zheng, Xingfei

作者: Zheng, Xingfei;Diao, Ying;Hu, Zhongli;Liu, Duchen;Liu, Huabo;Huang, Xinfang

作者机构:

关键词: Taro;Simple sequence repeat marker;Transcriptome;Genetic diversity

期刊名称:MOLECULAR BREEDING ( 影响因子:2.589; 五年影响因子:2.75 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: Taro (Colocasia esculenta) is an important crop with a long history of cultivation. In this study 5278 SSRs were identified in taro transcriptome data. A total of 2858 primer pairs were designed for marker development. 100 primers were randomly selected and synthesized. Among them, 72 primer pairs were successfully amplified and 62 were polymorphic in taro accessions. The number of alleles ranged from 2 to 14 for each different polymorphic locus and the polymorphism information content valued ranged from 0.01 to 0.82. The phylogenetic tree was also constructed to analyse the genetic diversity in 68 taro accessions. The large number of taro SSR markers developed in the present study will be useful in the researches of genetic diversity, germplasm characterization and molecular breeding etc.

分类号: Q94

  • 相关文献

[1]SSR marker development from peanut gynophore transcriptome sequencing. Tang, Ronghua,Zhou, Meili,Zhao, Chuanzhi,Hou, Lei,Li, Changsheng,Wang, Xingjun,Xia, Han,Wang, Xingjun.

[2]Genetic diversity and structure within and between wild and cultivated Saccharina japonica (Laminariales, Phaeophyta) revealed by SSR markers. Liu, Fuli,Yao, Jianting,Wang, Xiuliang,Duan, Delin,Liu, Fuli,Repnikova, Anna,Galanin, Dmitry A.. 2012

[3]Development of Polymorphic Genic SSR Markers by Transcriptome Sequencing in the Welsh Onion (Allium fistulosum L.). Yang, Liuyi,Wen, Changlong,Zhao, Hong,Liu, Qianchun,Yang, Jingjing,Wang, Yongqin,Yang, Liuyi,Liu, Lecheng. 2015

[4]Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative transcriptome analysis. Zhang, Xiaohui,Liu, Tongjin,Wei, Xiaochun,Qiu, Yang,Song, Jiangping,Wang, Haiping,Shen, Di,Li, Xixiang,Zhang, Xiaohui,Liu, Tongjin,Wei, Xiaochun,Qiu, Yang,Song, Jiangping,Wang, Haiping,Shen, Di,Li, Xixiang,Wei, Xiaochun,Agerbirk, Niels. 2015

[5]Large-scale development of EST-SSR markers in sponge gourd via transcriptome sequencing. Wu, Hai-Bin,Gong, Hao,Liu, Peng,He, Xiao-Li,Luo, Shao-Bo,Zheng, Xiao-Ming,Zhang, Chang-Yuan,He, Xiao-Ming,Luo, Jianning.

[6]Development and characterization of simple sequence repeat (SSR) markers based on a full-length cDNA library of Napier Grass (Pennisetum purpureum Schum). Wang, Jia,Hu, Zhongli,Diao, Ying,Chen, Zhitong,Huang, Yibing,Jin, Surong.

[7]Characterization of 40 single nucleotide polymorphism (SNP) via T (m)-shift assay in the mud crab (Scylla paramamosain). Feng, Nana,Ma, Hongyu,Ma, Chunyan,Xu, Zhen,Li, Shujuan,Jiang, Wei,Liu, Yuexing,Ma, Lingbo,Feng, Nana,Xu, Zhen,Li, Shujuan,Jiang, Wei,Liu, Yuexing.

[8]Identification of AG-V, a new anastomosis group of binucleate Rhizoctonia spp. from taro and ginger in Yunnan province. Dong, Wenhan,Li, Xiaoguang,Yang, Genhua,Li, Chengyun,Li, Yanqiong,Duan, Chunfang,Naito, Shigeo,Conner, Robert L..

[9]QTL Mapping of Adult-Plant Resistance to Leaf Rust in the Wheat Cross Zhou 8425B/Chinese Spring Using High-Density SNP Markers. Zhang, Peipei,Qi, Aiyong,Li, Zaifeng,Liu, Daqun,Yin, Guihong,Zhou, Yue,Gao, Fengmei,Xia, Xianchun,He, Zhonghu. 2017

[10]Genetic analysis and gene-mapping of two reduced-culm-number mutants in rice. Jiang, H,Guo, LB,Xue, DW,Zeng, DL,Zhang, GH,Dong, GJ,Gu, MH,Qian, Q. 2006

[11]Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster. Kang, Houxiang,Yang, Yuhong,Zhang, Zhonghua,Zhang, Shengping,Mao, Zhenchuan,Cheng, Guohua,Gu, Xingfang,Huang, Sanwen,Xie, Bingyan,Weng, Yiqun,Kang, Houxiang,Yang, Yuhong,Zhang, Zhonghua,Zhang, Shengping,Mao, Zhenchuan,Cheng, Guohua,Gu, Xingfang,Huang, Sanwen,Xie, Bingyan.

[12]Genetic Diversity of Soybean and the Establishment of a Core Collection Focused on Resistance to Soybean Cyst Nematode. Ma, YS,Wang, WH,Wang, LX,Ma, FM,Wang, PW,Chang, RZ,Qiu, LJ.

[13]Sequence-characterized amplified region and simple sequence repeat markers for identifying the major quantitative trait locus responsible for seedling resistance to downy mildew in Chinese cabbage (Brassica rapa ssp pekinensis). Yu, Shuancang,Zhang, Fenglan,Zhao, Xiuyun,Yu, Yangjun,Zhang, Deshuang.

[14]Heterozygosities and genetic relationship of tea cultivars revealed by simple sequence repeat markers and implications for breeding and genetic mapping programs. Tan, L. Q.,Qi, G. N.,Chen, S. X.,Zou, Y.,Zhang, C. C.,Wang, L. Y.,Wei, K.,Wu, L. Y.,Cheng, H.,Wang, L. Y.,Wei, K.,Cheng, H.. 2015

[15]Quantitative trait loci mapping of adult-plant resistance to leaf rust in a Fundulea 900 x 'Thatcher' heat cross. Zhang, Peipei,Qi, Aiyong,Li, Zaifeng,Liu, Daqun,Zhou, Yue,Xia, Xianchun,He, Zhonghu,He, Zhonghu.

[16]Different responses of soybean cyst nematode resistance between two RIL populations derived from Peking x 7605 under two ecological sites. Li, Yongchun,Guo, Na,Zhao, Jinming,Zhou, Bin,Ding, Hui,Gai, Junyi,Xing, Han,Li, Yongchun,Xu, Ran,Zhao, Weiguo.

[17]The restorer gene for soybean M-type cytoplasmic male sterility, Rf-m, is located in a PPR gene-rich region on chromosome 16. Wang, Dagang,Zhang, Lei,Li, Jiekun,Hu, Guoyu,Wu, Qian,Huang, Zhiping,Jiang, Haiyan.

[18]A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies. Liu, Xiaohui,Lu, Tingting,Yu, Shuliang,Li, Ying,Huang, Yuchen,Huang, Tao,Zhang, Lei,Zhu, Jingjie,Zhao, Qiang,Fan, Danlin,Mu, Jie,Shangguan, Yingying,Feng, Qi,Guan, Jianping,Ying, Kai,Zhang, Yu,Lin, Zhixin,Sun, Zongxiu,Qian, Qian,Lu, Yuping,Han, Bin.

[19]Taxonomic status and genetic diversity of cultured largemouth bass Micropterus salmoides in China. Bai, Junjie,Quan, Yingchun,Liang, Suxian,Lutz-Carrillo, Dijar J.,Liang, Suxian.

[20]Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Wang, Shufen,He, Qiwei,Liu, Xianxian,Xu, Wenling,Li, Libin,Gao, Jianwei,Wang, Fengde,Wang, Xiufeng. 2012

作者其他论文 更多>>