Saccharina genomes provide novel insight into kelp biology

文献类型: 外文期刊

第一作者: Ye, Naihao

作者: Ye, Naihao;Zhang, Xiaowen;Fan, Xiao;Xu, Dong;Wang, Dongsheng;Wang, Yitao;Guan, Zheng;Shao, Changwei;Zhuang, Zhimeng;Miao, Miao;Zheng, Yi;Wang, Jinfeng;Zhou, Lin;Gao, Yuan;Shi, Wenyu;Ji, Peifeng;Zhao, Fangqing;Miao, Miao;Zheng, Yi;Zhou, Lin;Gao, Yuan;Shi, Wenyu;Ji, Peifeng;Li, Demao;Gao, Zhengquan;Qi, Ji;Qi, Ji

作者机构:

关键词: ALGA ECTOCARPUS-SILICULOSUS;DE-NOVO IDENTIFICATION;LAMINARIA-DIGITATA;BROWN-ALGAE;RNA-SEQ;PHYLOGENETIC ANALYSES;MANNITOL METABOLISM;MAXIMUM-LIKELIHOOD;DEFENSE RESPONSES;GENE PREDICTION

期刊名称:NATURE COMMUNICATIONS ( 影响因子:14.919; 五年影响因子:15.805 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: Seaweeds are essential for marine ecosystems and have immense economic value. Here we present a comprehensive analysis of the draft genome of Saccharina japonica, one of the most economically important seaweeds. The 537-Mb assembled genomic sequence covered 98.5% of the estimated genome, and 18,733 protein-coding genes are predicted and annotated. Gene families related to cell wall synthesis, halogen concentration, development and defence systems were expanded. Functional diversification of the mannuronan C-5-epimerase and haloperoxidase gene families provides insight into the evolutionary adaptation of polysaccharide biosynthesis and iodine antioxidation. Additional sequencing of seven cultivars and nine wild individuals reveal that the genetic diversity within wild populations is greater than among cultivars. All of the cultivars are descendants of a wild Saccharina japonica accession showing limited admixture with Saccharina longissima. This study represents an important advance toward improving yields and economic traits in Saccharina and provides an invaluable resource for plant genome studies.

分类号: N

  • 相关文献

[1]Biodiversity and seasonal variation of the cyanobacterial assemblage in a rice paddy field in Fujian, China. Song, TY,Martensson, L,Eriksson, T,Zheng, WW,Rasmussen, U.

[2]Bioinformatic prediction of selenoprotein genes in the dolphin genome. Chen Hua,Ni JiaZuan,Liu Qiong,Jiang Liang,Zhang JiHong. 2012

[3]Localization of a New Gene for Bitterness in Cucumber. Zhang, Shengping,Miao, Han,Sun, Rifei,Wang, Xiaowu,Huang, Sanwen,Gu, Xingfang,Wehner, Todd C.. 2013

[4]Molecular Mapping and Candidate Gene Analysis for Numerous Spines on the Fruit of Cucumber. Zhang, Shengping,Liu, Shulin,Miao, Han,Wang, Min,Liu, Panna,Gu, Xingfang,Wehner, Todd C..

[5]SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice. Wang, Shuai,Lei, Cailin,Wang, Jiulin,Ma, Jian,Tang, Sha,Wang, Chunlian,Zhao, Kaijun,Tian, Peng,Qi, Changyan,Cheng, Zhijun,Zhang, Xin,Guo, Xiuping,Wu, Chuanyin,Wan, Jianmin,Zhang, Huan,Liu, Linglong,Wan, Jianmin.

[6]Expression analysis of major genes involved in signaling pathways during infection of Chinese cabbage with Hyaloperonospora brassicae. Gao, Tingting,Yu, Shuancang,Zhang, Fenglan,Yu, Yangjun,Zhang, Deshuang,Zhao, Xiuyun,Wang, Weihong,Gao, Tingting,Chen, Xuehao. 2014

[7]Expression of the ethylene response factor gene TSRF1 enhances abscisic acid responses during seedling development in tobacco. Zhang, Hongbo,Zhang, Zhijin,Huang, Rongfeng,Zhang, Hongbo,Chen, Jia,Wang, Xue-Chen,Yang, Yuhong,Zhang, Hongbo,Zhang, Zhijin,Huang, Rongfeng.

[8]Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice. Ma, Jin,Sodmergen,Chen, Jun,Wang, Min,Ren, Yulong,Wang, Shuai,Lei, Cailin,Cheng, Zhijun. 2018

[9]Watery Saliva Secreted by the Grain Aphid Sitobion avenae Stimulates Aphid Resistance in Wheat. Zhang, Yong,Fan, Jia,Chen, Julian,Zhang, Yong,Francis, Frederic. 2017

[10]Pectinase production by Aspergillus niger using wastewater in solid state fermentation for eliciting plant disease resistance. Bai, ZH,Zhang, HX,Qi, HY,Peng, XW,Li, BJ.

[11]Malus hupehensis miR168 Targets to ARGONAUTE1 and Contributes to the Resistance against Botryosphaeria dothidea Infection by Altering Defense Responses. Yu, Xinyi,Hou, Yingjun,Wang, Sanhong,Wang, Peihong,Qu, Shenchun,Yu, Xinyi,Chen, Weiping. 2017

[12]Isolation and identification of a gene in response to rice blast disease in rice. Zheng, XW,Chen, XW,Zhang, XH,Lin, ZZ,Shang, JJ,Xu, JC,Zhai, WX,Zhu, LH.

[13]Association of decreased expression of a Myb transcription factor with the TPD (tapping panel dryness) syndrome in Hevea brasiliensis. Chen, SC,Peng, SQ,Huang, GX,Wu, KX,Fu, XH,Chen, ZQ.

[14]Characterization of the complete mitochondrial genome of the cloacal tapeworm Cloacotaenia megalops (Cestoda: Hymenolepididae). Guo, Aijiang,Guo, Aijiang. 2016

[15]Contracaecum rudolphii B: gene content, arrangement and composition of its complete mitochondrial genome compared with Anisakis simplex s.l.. Lin, Rui-Qing,Liu, Guo-Hua,Zhang, Yuan,Zhou, Dong-Hui,Song, Hui-Qun,Zhu, Xing-Quan,Lin, Rui-Qing,Zhang, Yuan,Yuan, Zi-Guo,Song, Hui-Qun,Liu, Guo-Hua,Zhu, Xing-Quan,D'Amelio, Stefano,Zou, Feng-Cai,Zhu, Xing-Quan.

[16]Characterization of the complete mitochondrial genome sequence of Spirometra erinaceieuropaei (Cestoda: Diphyllobothriidae) from China. Liu, Guo-Hua,Li, Chun,Li, Jia-Yuan,Zhou, Dong-Hui,Zou, Feng-Cai,Zhu, Xing-Quan,Liu, Guo-Hua,Zhu, Xing-Quan,Li, Chun,Li, Jia-Yuan,Lin, Rui-Qing,Xiong, Rong-Chuan,Zou, Feng-Cai,Zhu, Xing-Quan.

[17]Phylogenetic studies of four Anser cygnoides (Anserini: Anserinae) in Hunan province of China based on complete mitochondrial DNA sequences. Dai, Qiu-Zhong,Lin, Qian,Dai, Qiu-Zhong,Lin, Qian,Jiang, Gui-Tao.

[18]The complete mitochondrial genome of Pseudoterranova azarasi and comparative analysis with other anisakid nematodes. Liu, Shan-Shan,Weng, Ya-Biao,Liu, Shan-Shan,Liu, Guo-Hua,Zhu, Xing-Quan.

[19]The complete mitochondrial genome of rabbit pinworm Passalurus ambiguus: genome characterization and phylogenetic analysis. Liu, Guo-Hua,Li, Sheng,Zhu, Xing-Quan,Li, Sheng,Zou, Feng-Cai,Zhu, Xing-Quan,Wang, Chun-Ren,Zhu, Xing-Quan.

[20]Characterization of the complete mitochondrial genomes of two whipworms Trichuris ovis and Trichuris discolor (Nematoda: Trichuridae). Liu, Guo-Hua,Wang, Yan,Xu, Min-Jun,Zhou, Dong-Hui,Li, Jia-Yuan,Song, Hui-Qun,Zhu, Xing-Quan,Liu, Guo-Hua,Zhu, Xing-Quan,Wang, Yan,Li, Jia-Yuan,Lin, Rui-Qing,Ye, Yong-Gang,Zhu, Xing-Quan.

作者其他论文 更多>>