Saccharina genomes provide novel insight into kelp biology

文献类型： 外文期刊

第一作者： Ye, Naihao

作者： Ye, Naihao;Zhang, Xiaowen;Fan, Xiao;Xu, Dong;Wang, Dongsheng;Wang, Yitao;Guan, Zheng;Shao, Changwei;Zhuang, Zhimeng;Miao, Miao;Zheng, Yi;Wang, Jinfeng;Zhou, Lin;Gao, Yuan;Shi, Wenyu;Ji, Peifeng;Zhao, Fangqing;Miao, Miao;Zheng, Yi;Zhou, Lin;Gao, Yuan;Shi, Wenyu;Ji, Peifeng;Li, Demao;Gao, Zhengquan;Qi, Ji;Qi, Ji

作者机构：

关键词： ALGA ECTOCARPUS-SILICULOSUS;DE-NOVO IDENTIFICATION;LAMINARIA-DIGITATA;BROWN-ALGAE;RNA-SEQ;PHYLOGENETIC ANALYSES;MANNITOL METABOLISM;MAXIMUM-LIKELIHOOD;DEFENSE RESPONSES;GENE PREDICTION

期刊名称：NATURE COMMUNICATIONS （ 影响因子：14.919； 五年影响因子：15.805 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Seaweeds are essential for marine ecosystems and have immense economic value. Here we present a comprehensive analysis of the draft genome of Saccharina japonica, one of the most economically important seaweeds. The 537-Mb assembled genomic sequence covered 98.5% of the estimated genome, and 18,733 protein-coding genes are predicted and annotated. Gene families related to cell wall synthesis, halogen concentration, development and defence systems were expanded. Functional diversification of the mannuronan C-5-epimerase and haloperoxidase gene families provides insight into the evolutionary adaptation of polysaccharide biosynthesis and iodine antioxidation. Additional sequencing of seven cultivars and nine wild individuals reveal that the genetic diversity within wild populations is greater than among cultivars. All of the cultivars are descendants of a wild Saccharina japonica accession showing limited admixture with Saccharina longissima. This study represents an important advance toward improving yields and economic traits in Saccharina and provides an invaluable resource for plant genome studies.

分类号： N

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