Phylogenetic Relationships in the Genus Rosa Revisited Based on rpl16, trnL-F, and atpB-rbcL Sequences

文献类型： 外文期刊

第一作者： Liu, Chengyuan

作者： Liu, Chengyuan;Xia, Tao;Fang, Yanming;Liu, Chengyuan;Wang, Hui;Wang, Guoliang;Zhang, Shouzhou;Wang, Qigang

作者机构：

关键词： Rosa;phylogeny;rpl16;trnL-F;atpB-rbcL

期刊名称：HORTSCIENCE （ 影响因子：1.455； 五年影响因子：1.617 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Three chloroplast DNA (cpDNA) sequences [the rpl16 intron, the trnL-F, and atpB-rbcL intergenic spacer (IGS)] were employed to study phylogenetic relationships in the genus Rosa. Phylogenetic analyses using these three concatenated sequences were performed using maximum parsimony (MP) and Bayesian inference (BI) methods. Both analyses results suggest that the molecular phylogeny conforms closely to the conventional classification of botanical sections. Morphological similarities between R. sects. Synstylae and Chinenses, and R. sects. Rosa and Carolinae are corroborated on the molecular level in our analyses. Four taxa from R. sect. Pimpinellifoliae are further divided into two small clades, which reflect the morphological characters for these species on a molecular level. Whereas three accessions of R. foetida from R. sect. Pimpinellifoliae form a separate clade. R. xfortuniana forms a clade with R. laevigata based on its maternal inheritance of cpDNA. R. xcooperii is hypothesized to be a hybrid with seed parent from R. sects. Synstylae and Chinenses. And R. roxburghii should be classified as a section within the R. subgen. Rosa, rather than being treated as its own subgenus, based on molecular analyses.

分类号： S6

  • 相关文献

[1]Phylogeny of the genus Morus (Urticales : Moraceae) inferred from ITS and trnL-F sequences. Zhao, WG,Pan, YL,Zhang, ZF,Jia, SH,Miao, XX,Huang, YP. 2005

[2]Phylogeny of Crocus (Iridaceae) based on one chloroplast and two nuclear loci: Ancient hybridization and chromosome number evolution. Harpke, Doerte,Meng, Shuchun,Rutten, Twan,Blattner, Frank R.,Meng, Shuchun,Kerndorff, Helmut.

[3]THE PHYLOGENETIC RELATIONSHIPS AMONG GERMPLASM RESOURCES OF WILD RAMIE (BOEHMERIA NIVEA L. GAUD) IN CHINA BASED ON trnL-F AND ITS SEQUENCES. Yu Runqing,Baloch, Sana Ullah,Liu Lijun,Zhong Xinyue,Wang Bo,Peng Dingxiang,Pan Qihui,Gong Songlin. 2015

[4]Expression Pattern Analysis of Four Mlo Genes from Rose. Qiu, Xianqin,Jian, Hongying,Wang, Qigang,Tang, Kaixue,Qiu, Xianqin,Bao, Manzhu.

[5]The Influence of Plant Growth Regulators and Light Quality on Somatic Embryogenesis in China Rose (Rosa chinensis Jacq.). Chen, Ji-Ren,Wu, Lian,Hu, Bo-Wen,Yi, Xing,Deng, Zi-Niu,Xiong, Xing-Yao,Liu, Rong,Deng, Zi-Niu,Xiong, Xing-Yao,Xiong, Xing-Yao. 2014

[6]Karyological diversity of wild Rosa in Yunnan, southwestern China. Jian, Hong Ying,Zhang, Ting,Wang, Qi Gang,Li, Shu Bin,Zhang, Hao,Tang, Kai Xue.

[7]Phylogenetic relationships of wild roses in China based on nrDNA and matK data. Qiu, Xianqin,Zhang, Hao,Wang, Qigang,Jian, Hongying,Yan, Huijun,Zhang, Ting,Wang, Jihua,Tang, Kaixue.

[8]Genetic Relationships of Wild Roses, Old Garden Roses, and Modern Roses Based on Internal Transcribed Spacers and matK Sequences. Qiu, Xianqin,Zhang, Hao,Jian, Hongying,Wang, Qigang,Zhou, Ningning,Yan, Huijun,Zhang, Ting,Tang, Kaixue.

[9]Fungal Biodiversity Profiles 21-30. Buyck, Bart,Duhem, Bernard,Hofstetter, Valerie,Das, Kanad,Parihar, Arvind,Jayawardena, Ruvishika S.,Niveiro, Nicolas,Michlig, Andrea,Fabian Popoff, Orlando,Andrea Ramirez, Natalia,Niveiro, Nicolas,Michlig, Andrea,Fabian Popoff, Orlando,Andrea Ramirez, Natalia,Lewish, David P.,Pereira, Olinto L.,da Silva, Meiriele,Prasher, Indu B.,Verma, Rajnish K.,Adhikari, Sinchan,Omar Alberto, Edgardo,Bulgakov, Timur S.,Castareda-Ruiz, Rafael F.,Hembrom, Manoj E.,Hyde, Kevin D.,Hyde, Kevin D.,Buyck, Bart,Nuytinck, Jorinde.

[10]Identification and Bioinformatics Analysis of SnRK2 and CIPK Family Genes in Sorghum. Li Li-bin,Gao Jian-wei,Zhang Yi-rong,Liu Kai-chang,Ni Zhong-fu,Sun Qi-xin. 2010

[11]Analyses of the NAC Transcription Factor Gene Family in Gossypium raimondii Ulbr.: Chromosomal Location, Structure, Phylogeny, and Expression Patterns. Haihong Shang ,Wei Li,Changsong Zou,Youlu Yuan. 2013

[12]Diversity of Penicillium species isolated from heavy metal polluted soil in Guizhou Province, China. Zhou, Qing-Xin,Wang, Yong,Houbraken, Jos,Li, Qi-Rui,Xu, Ying,Hyde, Kevin D.,Hyde, Kevin D.,Mckenzie, Eric H. C.,Wang, Yong,Wang, Yong.

[13]Comprehensive analysis of NAC transcription factors in diploid Gossypium: sequence conservation and expression analysis uncover their roles during fiber development. Haihong Shang,Zhongna Wang,Changsong Zou,Zhen Zhang,Weijie Li,Junwen Li,Yuzhen Shi,Wankui Gong,Tingting Chen,Aiying Liu,Juwu Gong,Qun Ge,Youlu Yuan. 2016

[14]Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development. Weijie Li,Haihong Shang,Qun Ge,Changsong Zou,Juan Cai,Daojie Wang,Senmiao Fan,Zhen Zhang,Xiaoying Deng,Yunna Tan,Weiwu Song,Pengtao Li,Palanga Kibalou Koffi,Muhammad Jamshed,Quanwei Lu,Wankui Gong,Junwen Li,Yuzhen Shi,Tingting Chen,Juwu Gong,Aiying Liu,Youlu Yuan. 2016

[15]More than just a coating: Ecological importance, taxonomic occurrence and phylogenetic relationships of seed coat mucilage. Yang, Xuejun,Huang, Zhenying,Yang, Xuejun,Baskin, Jerry M.,Baskin, Carol C.,Baskin, Carol C.. 2012

[16]Two novel Acervus species extend their distribution within Yunnan, China. Ekanayaka, Anusha H.,Hyde, Kevin D.,Ekanayaka, Anusha H.,Zhao, Qi,Ekanayaka, Anusha H.,Zhao, Qi,Pu, En-Da,Jones, E. B. Gareth. 2016

[17]Halodiatrype, a novel diatrypaceous genus from mangroves with H. salinicola and H-avicenniae spp. nov.. Dayarathne, M. C.,To-anun, C.,Jones, E. B. G.,Dayarathne, M. C.,Phookamsak, R.,Hyde, K. D.,Manawasinghe, I. S.,Dayarathne, M. C.,Phookamsak, R.,Hyde, K. D.,Dayarathne, M. C.,Phookamsak, R.,Hyde, K. D.,Manawasinghe, I. S.. 2016

[18]The complete mitochondrial genome sequence of Hemibagrus sp. (Siluriformes: Bagridae), molecular data for species identification. Zhou, Can-Lin,Zhou, Can-Lin,Tian, Juan,Yang, Chang-Geng. 2016

[19]Amplification of 16S rRNA genes of Anaplasma species in China for phylogenetic analysis. Liu, ZJ,Luo, JX,Bai, Q,Ma, ML,Guan, GG,Yin, H. 2005

[20]Genome-wide identification and characterization of GRAS transcription factors in sacred lotus (Nelumbo nucifera). Wang, Yu,Shi, Shenglu,Zhou, Ying,Zhou, Yu,Tang, Xiaoqing,Yang, Jie. 2016

作者其他论文 更多>>

微信小程序