A genome-wide association study of plant height and primary branch number in rapeseed (Brassica napus)

文献类型： 外文期刊

第一作者： Li, Feng

作者： Li, Feng;Chen, Biyun;Xu, Kun;Gao, Guizhen;Yan, Guixin;Qiao, Jiangwei;Li, Jun;Li, Hao;Li, Lixia;Xiao, Xin;Zhang, Tianyao;Wu, Xiaoming;Li, Feng;Nishio, Takeshi

作者机构：

关键词： Brassica napus;Association mapping;SNP;Plant height;Primary branch number;Plant architecture

期刊名称：PLANT SCIENCE （ 影响因子：4.729； 五年影响因子：5.132 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Crop plant architecture plays a highly important role in its agronomic performance. Plant height (PH) and primary branch number (PB) are two major factors that affect the plant architecture of rapeseed (Brassica napus). Previous studies have shown that these two traits are controlled by multiple quantitative trait loci (QTL); however, QTLs have not been delimited to regions less than 10 cM. Genome-wide association study (GWAS) is a highly efficient approach for identifying genetic loci controlling traits at relatively high resolution. In this study, variations in PH and PB of a panel of 472 rapeseed accessions that had previously been analyzed by a 60k SNP array were investigated for three consecutive years and studied by GWAS. Eight QTLs on chromosome A03, A05, A07 and C07 were identified for PH, and five QTLs on A01, A03, A07 and C07 were identified for PB. Although most QTLs have been detected in previous studies based on linkage analyses, the two QTLs of PH on A05 and the QTL of PB on C07 were novel. In the genomic regions close to the GWAS peaks, orthologs of the genes involved in flower development, phytohormone biosynthesis, metabolism and signaling in Arabidopsis were identified. (C) 2015 Elsevier Ireland Ltd. All rights reserved.

分类号： Q94

  • 相关文献

[1]Genome-wide association study reveals the genetic architecture of flowering time in rapeseed (Brassica napus L.). Xu, Liping,Hu, Kaining,Wen, Jing,Yi, Bin,Shen, Jinxiong,Ma, Chaozhi,Tu, Jinxing,Fu, Tingdong,Zhang, Zhenqian,Guan, Chunyun,Chen, Song,Hua, Wei,Li, Jiana.

[2]Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.). Li, Feng,Chen, Biyun,Xu, Kun,Wu, Jinfeng,Song, Weilin,Liu, Shengyi,Gao, Guizhen,Wang, Nian,Yan, Guixin,Qiao, Jiangwei,Li, Jun,Li, Hao,Xiao, Xin,Zhang, Tianyao,Wu, Xiaoming,Bancroft, Ian,Harper, Andrea L.,Trick, Martin.

[3]Association mapping of quantitative trait loci for yield-related agronomic traits in rice (Oryza sativa L.). Xu Fei-fei,Huang Yan,Tong Chuan,Chen Ya-ling,Bao Jin-song,Jin Liang. 2016

[4]Genome-Wide Association Mapping Reveals the Genetic Control Underlying Branch Angle in Rapeseed (Brassica napus L.). Li, Hongge,Zhang, Liping,Hu, Jihong,Zhang, Fugui,Chen, Biyun,Xu, Kun,Gao, Guizhen,Li, Hao,Zhang, Tianyao,Wu, Xiaoming,Li, Hongge,Li, Zaiyun. 2017

[5]A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7. Hu, Shikai,Dong, Guojun,Xu, Jie,Su, Yan,Shi, Zhenyuan,Ye, Weijun,Li, Yuanyuan,Li, Gengmi,Zhang, Bin,Hu, Jiang,Qian, Qian,Zeng, Dali,Guo, Longbiao. 2013

[6]Association mapping of dynamic developmental plant height in common wheat. Zhang, Jianan,Hao, Chenyang,Ren, Qian,Chang, Xiaoping,Jing, Ruilian,Zhang, Jianan,Zhang, Jianan,Liu, Guiru.

[7]Efficacy of pyramiding elite alleles for dynamic development of plant height in common wheat. Zhang, Bin,Shi, Wei,Li, Weiyu,Chang, Xiaoping,Jing, Ruilian,Zhang, Bin,Shi, Wei,Li, Weiyu,Chang, Xiaoping,Jing, Ruilian.

[8]Genome-Wide Association Study Reveals Candidate Genes for Control of Plant Height, Branch Initiation Height and Branch Number in Rapeseed (Brassica napus L.). Zheng, Ming,Liu, Hongfang,Tang, Min,Yang, Hongli,Li, Xiaokang,Liu, Jinglin,Sun, Xingchao,Wang, Xinfa,Hua, Wei,Wang, Hanzhong,Peng, Cheng,Xu, Junfeng. 2017

[9]QTL Analysis of Spike Morphological Traits and Plant Height in Winter Wheat (Triticum aestivum L.) Using a High-Density SNP and SSR-Based Linkage Map. Zhai, Huijie,Feng, Zhiyu,Li, Jiang,Liu, Xinye,Ni, Zhongfu,Sun, Qixin,Zhai, Huijie,Feng, Zhiyu,Li, Jiang,Liu, Xinye,Ni, Zhongfu,Sun, Qixin,Xiao, Shihe. 2016

[10]GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Jia, Qiaojun,Jia, Qiaojun,Westcott, Sharon,Lance, Reg,Li, Chengdao,Zhang, Jingjuan,Westcott, Sharon,Zhang, Xiao-Qi,Li, Chengdao,Bellgard, Mathew. 2009

[11]Mapping of a major QTL for salt tolerance of mature field-grown maize plants based on SNP markers. Zhao, Yanxin,Zhang, Ruyang,Xing, Jinfeng,Duan, Minxiao,Li, Jingna,Wang, Naishun,Wang, Wenguang,Zhang, Shasha,Zhang, Huasheng,Shi, Zi,Song, Wei,Zhao, Jiuran,Chen, Zhihui. 2017

[12]LEAFY HEAD2, which encodes a putative RNA-binding protein, regulates shoot development of rice. Xiong, Guo Sheng,Hu, Xing Ming,Jiao, Yong Qing,Yu, Yan Chun,Chu, Cheng Cai,Li, Jia Yang,Qian, Qian,Wang, Yong Hong. 2006

[13]Insertion of a solo LTR retrotransposon associates with spur mutations in 'Red Delicious' apple (Malus x domestica). Han, Mengxue,Qiu, Huarong,Guo, Jing,Mu, Wenlei,Sun, Jun,Sun, Qibao,Zhou, Junyong,Lu, Lijuan,Han, Mengxue,Mu, Wenlei.

[14]Two Novel AP2/EREBP Transcription Factor Genes TaPARG Have Pleiotropic Functions on Plant Architecture and Yield-Related Traits in Common Wheat. Li, Bo,Li, Qiaoru,Mao, Xinguo,Li, Ang,Wang, Jingyi,Chang, Xiaoping,Hao, Chenyang,Zhang, Xueyong,Jing, Ruilian. 2016

[15]Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines. Zhou, Zhiqiang,Hao, Zhuanfang,Li, Mingshun,Zhang, Degui,Yong, Hongjun,Zhang, Shihuang,Weng, Jianfeng,Li, Xinhai,Zhang, Chaoshu,Zhou, Yu,Wang, Zhenhua,Zeng, Xing,Di, Hong. 2016

[16]Genetic analysis and fine mapping of a dominant dwarfness gene from wild rice (Oryza barthii). Zhao, Zhigang,Zhang, Chao,Liu, Xi,Lin, Yun,Liu, Linglong,Tian, Yunlu,Chen, Liangming,Liu, Shijia,Jiang, Ling,Wan, Jianmin,Zhou, Jiawu,Tao, Dayun,Wan, Jianmin. 2018

[17]The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. Peng, Keqin,Huang, Zhigang,Tong, Jianhua,Kabir, Mohammed Humayun,Xiao, Langtao,Shen, Gezhi,Wang, Jianhui,Zhang, Jingzhe,Qin, Genji. 2015

[18]IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice. Song, Xiaoguang,Lu, Zefu,Yu, Hong,Shao, Gaoneng,Xiong, Jinsong,Meng, Xiangbing,Jing, Yanhui,Liu, Guifu,Xiong, Guosheng,Duan, Jingbo,Wang, Yonghong,Li, Jiayang,Song, Xiaoguang,Lu, Zefu,Yu, Hong,Shao, Gaoneng,Xiong, Jinsong,Meng, Xiangbing,Jing, Yanhui,Liu, Guifu,Xiong, Guosheng,Duan, Jingbo,Wang, Yonghong,Li, Jiayang,Shao, Gaoneng,Li, Jiayang,Yao, Xue-Feng,Liu, Chun-Ming,Li, Hongqing,Lu, Zefu,Xiong, Jinsong,Xiong, Guosheng. 2017

[19]Genetic analysis and fine mapping of a semi-dwarf gene in a centromeric region in rice (Oryza sativa L.). Chen, Mingjiang,Zhao, Zhigang,Chen, Liangming,Zhou, Feng,Zhong, Zhengzheng,Jiang, Ling,Wan, Jianmin,Wan, Jianmin.

[20]A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa). Li, Hui,Jiang, Ling,Wan, Jianmin,Sun, Wei,Cheng, Zhijun,Jin, Tianyun,Ma, Xiaoding,Guo, Xiuping,Wang, Jiulin,Zhang, Xin,Wu, Fuqing,Wu, Chuanyin,Wan, Jianmin,Youn, Ji-Hyun,Kim, Seong-Ki.

作者其他论文 更多>>

微信小程序