Discovery of genes associated with cadmium accumulation from gill of scallop Chlamys farreri based on high-throughput sequencing

文献类型: 外文期刊

第一作者: Zhang, Hui

作者: Zhang, Hui;Zhai, Yuxiu;Yao, Lin;Jiang, Yanhua;Li, Fengling;Zhang, Hui;Zhai, Yuxiu;Yao, Lin;Jiang, Yanhua;Li, Fengling;Zhang, Hui;Zhai, Yuxiu;Yao, Lin;Jiang, Yanhua;Li, Fengling

作者机构:

关键词: Comparative transcriptomics;Chlamys farreri;Cadmium accumulation;Differentially expressed genes

期刊名称:GENES & GENOMICS ( 影响因子:1.839; 五年影响因子:1.329 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: Chlamys farreri is an important economic mollusk and is able to accumulate cadmium (Cd) excessively. Two cDNA libraries from gill of C. farreri which were Cd treated or not were generated based on the Illumina sequencing platform in order to identify differentially expressed genes (DEGs) associated with cadmium accumulation. The analysis of comparative transcriptomics identified 82,800 unigenes and 128 differentially expressed genes. Of these, 8 of the most significant DEGs were verified by real-time PCR, showing consistent trends in expression patterns between the two techniques. KEGG pathways analysis revealed that 37 associated processes were highly enriched. A set of key DEGs were identified that may play important roles in cadmium exposure. Our work presents an overview of gene expression change during cadmium exposure to C. farreri and identifies a series of candidate genes and pathways for further research on the molecular mechanisms of cadmium accumulation.

分类号: Q

  • 相关文献

[1]Comparative transcriptomics reveals genes involved in metabolic and immune pathways in the digestive gland of scallop Chlamys farreri following cadmium exposure. Zhang Hui,Zhai Yuxiu,Yao Lin,Jiang Yanhua,Li Fengling,Zhang Hui,Zhai Yuxiu,Yao Lin,Jiang Yanhua,Li Fengling,Zhang Hui,Zhai Yuxiu,Yao Lin,Jiang Yanhua,Li Fengling. 2017

[2]Disruption of Secondary Wall Cellulose Biosynthesis Alters Cadmium Translocation and Tolerance in Rice Plants. Song, Xue-Qin,Liu, Li-Feng,Zhang, Bao-Cai,Gao, Ya-Ping,Liu, Xiang-Ling,Zhou, Yi-Hua,Jiang, Yi-Jun,Lin, Qing-Shan,Ling, Hong-Qing. 2013

[3]Regulatory mechanisms of oxidative species and phytohormones in marine microalgae Isochrysis zhangjiangensis under nitrogen deficiency. Wu, Shuang,Meng, Yingying,Cao, Xupeng,Xue, Song,Wu, Shuang. 2016

[4]Comparative Transcriptome Analysis Revealed Genes Commonly Responsive to Varied Nitrate Stress in Leaves of Tibetan Hulless Barley. Zeng, Xingquan,Wang, Yulin,Xu, Qijun,Yuan, Hongjun,Tang, Yawei,Nyima, Tashi,Wei, Zexiu,Zeng, Xingquan,Wang, Yulin,Xu, Qijun,Yuan, Hongjun,Tang, Yawei,Nyima, Tashi,Wei, Zexiu,Zeng, Xingquan,Wang, Yulin,Xu, Qijun,Yuan, Hongjun,Tang, Yawei,Qin, Cheng,Bai, Lijun. 2016

[5]The difference of cadmium accumulation between the indica and japonica subspecies and the mechanism of it. Zhou, Quan,Shao, Guo-Sheng,Zhang, Ying-Xing,Dong, Qing,Wang, Hong,Cheng, Shi-Hua,Cao, Li-Yong,Shen, Xi-Hong.

[6]Assortative fertilization in Chlamys farreri and Patinopecten yessoensis and its implication in scallop hybridization. Lu, Zhengming,Yang, Aiguo,Wang, Qingyin,Liu, Zhihong,Zhou, Liqing. 2006

[7]Variations in retention efficiency of bivalves to different concentrations and organic content of suspended particles. Zhang Jihong,Fang Jianguang,Liang Xingming. 2010

[8]Bioinformatics analysis of hemocyte miRNAs of scallop Chlamys farreri against acute viral necrobiotic virus (AVNV). Chen, Guofu,Zhang, Chunyun,Jiang, Fengjuan,Wang, Yuanyuan,Xu, Zhong,Wang, Chongming. 2014

[9]A novel serine protease with clip domain from scallop Chlamys farreri. Zhu, Ling,Song, Linsheng,Zhao, Jiangmin,Li, Chenghua,Xu, Wei,Zhu, Ling,Mao, Yuze. 2008

[10]Carbon dioxide fixation by the seaweed Gracilaria lemaneiformis in integrated multi-trophic aquaculture with the scallop Chlamys farreri in Sanggou Bay, China. Han, Tingting,Han, Tingting,Han, Tingting,Jiang, Zengjie,Fang, Jianguang,Zhang, Jihong,Mao, Yuze,Zou, Jian,Huang, Yao,Wang, Dongzhe,Huang, Yao,Wang, Dongzhe.

[11]Molecular characterization and immune response expression of the QM gene from the scallop Chlamys farreri. Chen, Guofu,Zhang, Chunyun,Wang, Yue,Wang, Yuanyuan,Guo, Changlu,Wang, Chongming.

[12]Primary culture of Zhikong scallop Chlamys farreri hemocytes as an in vitro model for studying host-pathogen interactions. Ji, Aichang,Li, Xueyu,Fang, Sha,Qin, Zhenkui,Zhang, Zhifeng,Bai, Changming,Wang, Chongming.

[13]The effects of Zhikong scallop (Chlamys farreri) on the microbial food web in a phosphorus-deficient mariculture system in Sanggou Bay, China. Lu, Jiachang,Lu, Jiachang,Huang, Lingfeng,Xiao, Tian,Zhang, Wuchang,Jiang, Zengjie.

[14]Size fraction of phytoplankton and the contribution of natural plankton to the carbon source of Zhikong scallop Chlamys farreri in mariculture ecosystem of the Sanggou Bay. Jiang Zengjie,Du Meirong,Fang Jinghui,Gao Yaping,Li Jiaqi,Fang Jianguang,Jiang Zengjie,Fang Jianguang,Zhao Li. 2017

[15]A preliminary study of differentially expressed genes of the scallop Chlamys farreri against acute viral necrobiotic virus (AVNV). Chen, Guofu,Wang, Chenchao,Zhang, Chunyun,Wang, Yuanyuan,Xu, Zhong,Wang, Chongming. 2013

[16]Emerging and endemic types of Ostreid herpesvirus 1 were detected in bivalves in China. Bai, Changming,Wang, Chongming,Xia, Junyang,Zhang, Shuai,Huang, Jie,Bai, Changming,Wang, Chongming,Huang, Jie,Sun, Hailin.

[17]Physiological and biochemical responses of Zhikong scallop, Chlamys farreri, to different thermal stressors. Jiang, Weiwei,Jiang, Weiwei,Jiang, Weiwei,Jiang, Zengjie,Du, Meirong,Mao, Yuze,Li, Jiaqi,Fang, Jinghui,Lv, Xuning,Xue, Suyan,Wang, Wei,Zhang, Jihong,Fang, Jianguang,Jiang, Zengjie,Zhang, Jihong,Fang, Jianguang,Zhang, Yuan.

[18]Assessment of the local environmental impact of intensive marine shellfish and seaweed farming-Application of the MOM system in the Sungo Bay, China. Zhang, Jihong,Fang, Jianguang,Wang, Wei,Jiang, Zengjie,Zhang, Jihong,Fang, Jianguang,Wang, Wei,Jiang, Zengjie,Hansen, Pia Kupka.

[19]Modelling the effect of food depletion on scallop growth in Sungo Bay (China). Bacher, C,Grant, J,Hawkins, AJS,Fang, JG,Zhu, MY,Besnard, M.

[20]Identification and characterization of a novel calreticulin involved in the immune response of the Zhikong scallop, Chlamys farreri. Wang, Guanghua,Zhu, Dongfa,Wang, Guanghua,Yang, Ning,Zhang, Min,Jiang, Zengjie,Jiang, Zengjie.

作者其他论文 更多>>