Construction of a high-density genetic map for watermelon (Citrullus lanatus L.) based on large-scale SNP discovery by specific length amplified fragment sequencing (SLAF-seq)

文献类型： 外文期刊

第一作者： Shang, Jianli

作者： Shang, Jianli;Li, Na;Li, Nannan;Xu, Yongyang;Ma, Shuangwu;Wang, Jiming

作者机构：

关键词： Watermelon;High-density;Genetic map;SLAF-seq

期刊名称：SCIENTIA HORTICULTURAE （ 影响因子：3.463； 五年影响因子：3.672 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Watermelon (Citrullus lanatus L.) is an important vegetable crop worldwide, but a high-density genetic map of elite watermelon cultivars has not yet been reported. The present study reported the large-scale discovery of single nucleotide polymorphisms (SNPs) by specific length amplified fragment sequencing (SLAF-seq) for high-density genetic map construction using two elite watermelon cultivars. The map contained 2634 SNPs distributed on 11 linkage groups (LGs) corresponding to the number of chromosome pairs in watermelon. The total length of the linkage map was 1,906.31 cM, with an average distance of 0.72 cM between adjacent markers. Notably, 35 unmapped scaffolds, which contained 91 SNPs and covered 4.56 Mb, were dispersedly anchored to LGI, LG2, LG4, LG7, LG8, LG9 and LG11. Although disagreements were observed on LG1 and LG11, the local collinearity between the genetic and physical distances, haplotype map and heat map indicated that the genetic map herein is of high quality. The present study reports the first high-density linkage map of two watermelon elite parents. (C) 2016 Elsevier B.V. All rights reserved.

分类号： S6

  • 相关文献

[1]Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing. Zhang, Yanxin,Wang, Linhai,Li, Donghua,Ding, Xia,Zhang, Xiurong,Xin, Huaigen,Ma, Chouxian,Hong, Weiguo. 2013

[2]High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing. Jiang, Biao,Liu, Wenrui,Xie, Dasen,Peng, Qingwu,He, Xiaoming,Lin, Yu'e,Liang, Zhaojun,Jiang, Biao,Liu, Wenrui,Xie, Dasen,He, Xiaoming. 2015

[3]High-Density Genetic Map Construction and Gene Mapping of Basal Branching Habit and Flowers per Leaf Axil in Sesame. Mei, Hongxian,Liu, Yanyang,Du, Zhenwei,Wu, Ke,Cui, Chengqi,Jiang, Xiaolin,Zhang, Haiyang,Zheng, Yongzhan. 2017

[4]Construction of a high-density SNP genetic map in fluecured tobacco based on SLAF-seq. Gong, Daping,Xu, Xiuhong,Wang, Chuanyi,Ren, Min,Wang, Chunkai,Chen, Mingli,Huang, Long,Xu, Xiuhong,Wang, Chunkai,Wang, Chunkai.

[5]Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Wang, Long,Wu, Jun,Yin, Hao,Zhang, Shaoling,Wang, Long,Li, Xiugen,Wang, Lei,Xue, Huabai.

[6]Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq). Qian, Wei,Fan, Guiyan,Liu, Dandan,Zhang, Helong,Wang, Xiaowu,Wu, Jian,Xu, Zhaosheng. 2017

[7]High-Density Linkage Map Construction and Mapping of Salt-Tolerant QTLs at Seedling Stage in Upland Cotton Using Genotyping by Sequencing (GBS). Latyr Diouf,Du, Xiongming,Zhaoe Pan,Shou-Pu He,Wen-Fang Gong,Yin Hua Jia,Richard Odongo Magwanga,Kimbembe Romesh Eric Romy,Harun or Rashid,Joy Nyangasi Kirungu,Xiongming Du. 2017

[8]Optimized tillage practices and row spacing to improve grain yield and matter transport efficiency in intensive spring maize. Piao, Lin,Zhao, Ming,Piao, Lin,Li, Congfeng,Zhao, Ming,Qi, Hua.

[9]Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton. Junji Su,Chaoyou Pang,Hengling Wei,Libei Li,Bing Liang,Caixiang Wang,Meizhen Song,Hantao Wang,Shuqi Zhao,Xiaoyun Jia,Guangzhi Mao,Long Huang,Dandan Geng,Chengshe Wang,Shuli Fan. 2016

[10]High-Density Genetic Mapping Identifies New Major Loci for Tolerance to Low-Phosphorus Stress in Soybean. Zhang, Dan,Li, Hongyan,Chu, Shanshan,Lv, Haiyan,Wang, Jinshe,Zhang, Hengyou,Hu, Zhenbin,Yu, Deyue. 2016

[11]Rapid identification of rice blast resistance gene by specific length amplified fragment sequencing. Chen, Shen,Wang, Wen-juan,Su, Jing,Wang, Cong-ying,Feng, Ai-qing,Yang, Jian-yuan,Zeng, Lie-xian,Zhu, Xiao-yuan. 2016

[12]Cloning and Characterization of TaTGW-7A Gene Associated with Grain Weight in Wheat via SLAF-seq-BSA. Hu, Ming-Jian,Zhang, Hai-Ping,Liu, Kai,Cao, Jia-Jia,Wang, Sheng-Xing,Jiang, Hao,Wu, Zeng-Yun,Lu, Jie,Zhu, Xiao F.,Xia, Xian-Chun,Sun, Gen-Lou,Ma, Chuan-Xi,Chang, Cheng,Xia, Xian-Chun,Sun, Gen-Lou. 2016

[13]Construction of a High-Density Genetic Map Based on Large-Scale Marker Development in Mango Using Specific-Locus Amplified Fragment Sequencing (SLAF-seq). Luo, Chun,Shu, Bo,Yao, Quangsheng,Wu, Hongxia,Xu, Wentian,Wang, Songbiao. 2016

[14]Physical mapping and candidate gene prediction of fertility restorer gene of cytoplasmic male sterility in cotton. Zhao, Cunpeng,Zhao, Guiyuan,Geng, Zhao,Wang, Zhaoxiao,Wang, Kaihui,Liu, Suen,Zhang, Hanshuang,Guo, Baosheng,Geng, Junyi. 2018

[15]QTL Mapping by SLAF-seq and Expression Analysis of Candidate Genes for Aphid Resistance in Cucumber. Liang, Danna,Chen, Minyang,Qi, Xiaohua,Xu, Qiang,Zhou, Fucai,Chen, Xuehao,Liang, Danna. 2016

[16]Toward Identification of Black Lemma and Pericarp Gene Blp1 in Barley Combining Bulked Segregant Analysis and Specific-Locus Amplified Fragment Sequencing. Jia, Qiaojun,Liang, Zongsuo,Jia, Qiaojun,Liang, Zongsuo,Wang, Junmei,Zhu, Jinghuan,Hua, Wei,Shang, Yi,Yang, Jianming. 2017

[17]Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max. Li, Bin,Tian, Ling,Zhang, Jingying,Han, Fenxia,Yan, Shurong,Wang, Lianzheng,Sun, Junming,Huang, Long,Zheng, Hongkun. 2014

[18]Genome-Wide Association Study Identifying Candidate Genes Influencing Important Agronomic Traits of Flax (Linum usitatissimum L.)Using SLAF-seq. Xie, Dongwei,Dai, Zhigang,Yang, Zemao,Tang, Qing,Su, Jianguang,Xie, Dongwei,Zhao, Debao,Yang, Xue,Zhang, Liguo,Sun, Jian. 2018

[19]Genome-Wide SNP Markers Based on SLAF-Seq Uncover Breeding Traces in Rapeseed (Brassica napus L.). Zhou, Qinghong,Zhou, Can,Fan, Shuying,Wu, Caijun,Fu, Donghui,Huang, Yingjin,Zheng, Wei,Mason, Annaliese S.. 2017

[20]Mining candidate genes associated with powdery mildew resistance in cucumber via super-BSA by specific length amplified fragment (SLAF) sequencing. Zhang, Peng,Zhu, Yuqiang,Wang, Lili,Chen, Liping,Zhou, Shengjun. 2015

作者其他论文 更多>>

微信小程序