The complete chloroplast genome sequence of Lilium fargesii (Lilium, Liliaceae)

文献类型: 外文期刊

第一作者: Bi, Yu

作者: Bi, Yu;Dong, Ran;Bi, Yu;Du, Yunpeng;Chen, Xuqing;Yang, Fengping;Xue, Jing;Zhang, Xiuhai;Bi, Yu;Du, Yunpeng;Chen, Xuqing;Yang, Fengping;Xue, Jing;Zhang, Xiuhai

作者机构:

关键词: Lilium fargesii;Next generation sequencing;Chloroplast;Genome sequence

期刊名称:CONSERVATION GENETICS RESOURCES ( 影响因子:0.973; 五年影响因子:0.946 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: Lilium fargesii Franchet is an endangered species endemic to China. In this study, the complete chloroplast genome has been generated from the Next Generation Sequencing. The whole genome is 153,235 bp in length, and includes one large single copy region of 82,217 bp, one small single copy region of 17,038 bp and a pair of inverted repeat region of 26,990 bp. It contains 132 genes, comprising 86 protein-coding genes (78 PCG species), 38 transfer RNA (30 tRNA species) and eight ribosomal RNA genes (four rRNA species). In the maximum likelihood tree, all species of Lilium were clustered into two monophyletic groups with 100 % bootstrap value.

分类号: Q1

  • 相关文献

[1]The complete chloroplast genome of Lilium taliense, an endangered species endemic to China. Zhang, Qian,Zhang, Mingfang,Chen, Xuqing,Yang, Fengping,Xue, Jing,Du, Yunpeng,Zhang, Xiuhai,Bi, Yu.

[2]An NGS-based approach for the identification of sex-specific markers in snakehead (Channa argus). Ou, Mi,Yang, Cheng,Huang, Rong,Zhang, Ai-Di,Liao, Lan-Jie,Li, Yong-Ming,He, Li-Bo,Zhu, Zuo-Yan,Wang, Ya-Ping,Ou, Mi,Yang, Cheng,Luo, Qing,Chen, Kun-Ci. 2017

[3]The complete mitochondrial genome of the marbled rockfish Sebastiscus marmoratus (Scorpaeniformes, Scorpaenidae) from Japan. Sun, Dianrong,Zhang, Hui,Yanagimoto, Takashi,Yin, Lina,Gao, Tianxiang. 2015

[4]Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing. Akinyemi, Ibukun A.,Qi, Shuishui,Wu, Qingfa,Wang, Fang,Zhou, Benguo. 2016

[5]Complete mitochondrial genome of Leuciscus waleckii (Cypriniformes: Cyprinidae: Leuciscus). Wang, Baosen,Sun, Jinsheng,Wang, Baosen,Ji, Peifeng,Xu, Jian,Xu, Peng,Sun, Xiaowen,Sun, Jinsheng.

[6]The complete mitochondrial genome of the juvenile Atlantic bluefin tuna Thunnus thynnus (Perciformes, Scombridae). Li, Yanlu,Chen, Chao,Yu, Hong,Peng, Shiming,Sun, Shuguang,Wang, Lu,Kong, Xiangdi,Li, Yanlu,Chen, Chao,Kong, Xiangdi,Chen, Chao,Meng, Xiangjun,Huang, Ying.

[7]In-depth transcriptome analysis of Coilia ectenes, an important fish resource in the Yangtze River: de novo assembly, gene annotation. Shen, Huaishun,Gu, Ruobo,Xu, Gangchun,Xu, Pao,Nie, Zijuan,Shen, Huaishun,Xu, Pao,Hu, Yacheng.

[8]Identification of a viroid-like RNA in a lychee Transcriptome Shotgun Assembly. Wang, Hongqing,Jiang, Jihong,Zhang, Zhixiang,Li, Shifang,Hu, Bing,Hu, Guibing,Faure, Chantal,Marais, Armelle,Candresse, Thierry,Li, Shifang.

[9]Identification of Genomic Insertion and Flanking Sequence of G2-EPSPS and GAT Transgenes in Soybean Using Whole Genome Sequencing Method. Guo, Bingfu,Guo, Yong,Hong, Huilong,Qiu, Li-Juan,Guo, Bingfu,Guo, Yong,Hong, Huilong,Qiu, Li-Juan,Hong, Huilong. 2016

[10]The 3,000 rice genomes project. Rellosa, Myla Christy. 2014

[11]The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae). Liu, Fengqi,Han, Guiqing,Guo, Changhong,Liu, Fengqi,Han, Guiqing,Tembrock, Luke R.,Wu, Zhiqiang,Sun, Cheng. 2016

[12]Odorant-binding and chemosensory proteins identified in the antennal transcriptome of Adelphocoris suturalis Jakovlev. Gu, Shao-Hua,Zhu, Xiao-Qiang,Wei, Yu,Liu, Hang-Wei,Khalid, Hussain Dhiloo,Guo, Yu-Yuan,Zhang, Yong-Jun,Khalid, Hussain Dhiloo. 2017

[13]Splenic microRNA Expression Profiles and Integration Analyses Involved in Host Responses to Salmonella enteritidis Infection in Chickens. Li, Peng,Fan, Wenlei,Li, Qinghe,Wang, Jie,Liu, Ranran,Liu, Jie,Zheng, Maiqing,Cui, Huanxian,Zhao, Guiping,Wen, Jie,Li, Peng,Everaert, Nadia,Li, Peng,Wang, Jie,Liu, Jie,Wen, Jie,Zhang, Yonghong. 2017

[14]Comparative profiling of differentially expressed microRNAs between the follicular and luteal phases ovaries of goats. Zhu, Long,Chen, Tao,Sui, Menghua,Han, Chunyang,Fang, Fugui,Zhang, Xiaorong,Liu, Cuiyan,Ling, Yinghui,Sui, Menghua,Han, Chunyang,Fang, Fugui,Zhang, Xiaorong,Liu, Cuiyan,Ling, Yinghui,Ma, Yuehui,Chu, Mingxing. 2016

[15]Combined transcriptome and metabolome analyses to understand the dynamic responses of rice plants to attack by the rice stem borer Chilo suppressalis (Lepidoptera: Crambidae). Wang, Xingyun,Romeis, Jorg,Peng, Yufa,Li, Yunhe,Tzin, Vered,Romeis, Jorg. 2016

[16]Sequencing the Potato Genome: Outline and First Results to Come from the Elucidation of the Sequence of the World's Third Most Important Food Crop. Visser, Richard G. F.,Bachem, Christian W. B.,de Boer, Jan M.,Tang, Xiaomin,Bryan, Glenn J.,Chakrabati, Swarup K.,Feingold, Sergio,Gromadka, Robert,van Ham, Roeland C. H. J.,Huang, Sanwen,Jacobs, Jeanne M. E.,Kuznetsov, Boris,de Melo, Paulo E.,Milbourne, Dan,Orjeda, Gisella,Sagredo, Boris. 2009

[17]De novo sequencing and characterization of the Bradysia odoriphaga (Diptera: Sciaridae) larval transcriptome. Chen, Haoliang,Lin, Lulu,Xie, Minghui,Zhang, Guangling,Su, Weihua.

[18]High-throughput novel microsatellite marker of faba bean via next generation sequencing. Yang, Tao,Jia, Teng-Jiao,Guan, Jian-Ping,Sun, Xue-Lian,Jiang, Jun-Ye,Zong, Xu-Xiao,Bao, Shi-Ying,He, Yu-Hua,Ford, Rebecca,Hao, Jun-Jie,Zhang, Xiao-Yan. 2012

[19]Identification and comparative analysis of piRNAs in ovary and testis of Nile tilapia (Oreochromis niloticus). Zhou, Yi,Zhong, Huan,Xiao, Jun,Luo, Yongju,Gan, Xi,Zhou, Yi,Yan, Jinpeng,Yan, Jinpeng,Yu, Fan.

[20]The complete mitochondrial genome of the juvenile Pacific bluefin tuna Thunnus orientalis (Perciformes, Scombridae). Chen, Chao,Chen, Chao,Li, Yanlu,Yu, Hong,Peng, Shiming,Sun, Shuguang,Wang, Lu,Meng, Xiangjun,Huang, Ying,Kong, Xiangdi,Chen, Chao,Li, Yanlu.

作者其他论文 更多>>