Genetic diversity of garlic (Allium sativum L.) germplasm from China by fluorescent-based AFLP, SSR and InDel markers

文献类型： 外文期刊

第一作者： Wang, Haiping

作者： Wang, Haiping;Li, Xixiang;Liu, Xiuhui;Oiu, Yang;Song, Jiangping;Zhang, Xiaohui

作者机构：

关键词： garlic germplasm;genetic diversity;population structure

期刊名称：PLANT BREEDING （ 影响因子：1.832； 五年影响因子：1.956 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Garlic (Allium sativum L.), an asexually propagated crop, is an important vegetable and medicinal plant. China is the biggest garlic producer in the world; however, the genetic background of garlic from China is not well understood. In this study, population structure and clustering analysis of garlic germplasm was performed using amplified fragment length polymorphism (AFLP), simple sequence repeat (SSR) and insertion-deletion (InDel) markers. Among 212 accessions of garlic, genetic diversity analysis identified 546 alleles amplified by AFLP, SSR and InDel primers, and 492 of these were polymorphic. All accessions were divided into five groups by structure analysis and neighbor-joining clustering. Most traits, including allicin content, were only slightly affected by population structure, which indicated that this germplasm can be used as populations for association mapping. The results provide a molecular basis for understanding the genetic diversity of the garlic germplasm preserved in China.

分类号： S3

  • 相关文献

[1]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

[2]Analysis of genetic diversity and population structure in a tomato (Solanum lycopersicum L.) germplasm collection based on single nucleotide polymorphism markers. Wang, T.,Wang, T.,Zou, Q. D.,Qi, S. Y.,Wang, X. F.,Wu, Y. Y.,Zhang, Y. M.,Zhang, Z. J.,Li, H. T.,Liu, N.. 2016

[3]Mitochondrial DNA reveals low population differentiation in elongate loach, Leptobotia elongata (Bleeker): implications for conservation. Zhou, Dinggang,Liu, Guangxun,Zhou, Jian. 2012

[4]Genetic Diversity and Structure of Lolium Species Surveyed on Nuclear Simple Sequence Repeat and Cytoplasmic Markers. Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Yuyama, Nana,Cai, Hongwei,Stewart, Alan,Ding, Chenglong,Xu, Nengxiang,Kiyoshi, Takako. 2017

[5]Genetic variation and population structure of the oriental fruit moth Grapholita molesta in Shanxi, a major pome fruits growing region in North China. Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Wu, Yu-Peng,Ma, Rui-Yan. 2016

[6]Genetic diversity and population structure of cultivated bromeliad accessions assessed by SRAP markers. Zhang, Fei,Ge, Yaying,Wang, Weiyong,Shen, Xiaolan,Liu, Xiaojing,Liu, Jianxin,Tian, Danqing,Yu, Xinying. 2012

[7]Genetic diversity and population structure of ginseng in China based on RAPD analysis. Zhao, Yan,Xu, Yong-hua,Zhang, Lian-xue,Wang, Shi-jie,Han, Feng-bo,Li, Ru-sheng,Chen, Xiao-lin,Wang, Shi-jie,Li, Gang. 2016

[8]Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Liu, Jimei,Wang, Li,Geng, Yupeng,Wang, Qingbiao,Luo, Lijun,Zhong, Yang. 2006

[9]Analysis of Genetic Diversity and Population Structure of Maize Landraces from the South Maize Region of China. Liu Zhi-zhai,Guo Rong-hua,Wang Rong-huan,Shi Yun-su,Song Yan-chun,Wang Tian-yu,Li Yu,Liu Zhi-zhai,Cai Yi-lin,Guo Rong-hua,Cao Mo-ju,Zhao Jiu-ran,Wang Feng-ge,Wang Rong-huan. 2010

[10]Development of Cymbidium ensifolium genic-SSR markers and their utility in genetic diversity and population structure analysis in cymbidiums. Li, Xiaobai,Jin, Liang,Jin, Feng,Jackson, Aaron,Huang, Cheng,Li, Kehu,Shu, Xiaoli. 2014

[11]Development and characterization of microsatellite markers of the eastern keelback mullet (Liza affinis). Liu, L.,Song, N.,Gao, T. X.,Han, Z. Q.,Li, C. H.,Sun, D. R.. 2016

[12]Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing. Zhang, Tifu,Lv, Yuanda,Zhou, Ling,Lu, Haiyan,Liang, Shuaiqiang,Bao, Huabin,Zhao, Han,Gu, Minfeng,Liu, Yuhe. 2017

[13]Evaluation of the genetic diversity and population structure of five indigenous and one introduced Chinese goose breeds using microsatellite markers. Li, Jinjun,Yuan, Qingyuan,Shen, Junda,Tao, Zhengrong,Li, Guoqing,Tian, Yong,Wang, Deqian,Chen, Li,Lui, Lizhi. 2012

[14]Genetic diversity and structure of the core collection for maize inbred lines in China. Yu, Y.,Wang, R.,Shi, Y.,Song, Y.,Wang, T.,Li, Y.. 2007

[15]Genetic diversity and population structure in Elephantopus scaber (Asteraceae) from South China as revealed by ISSR markers. Wang, L.,Liu, J.,Zhang, W.,Wang, Q.,Zhao, X.,Liu, N.,Zhong, Y.. 2006

[16]Genetic Diversity, Population Structure, and Linkage Disequilibrium of an Association-Mapping Panel Revealed by Genome-Wide SNP Markers in Sesame. Cui, Chengqi,Mei, Hongxian,Liu, Yanyang,Zhang, Haiyang,Zheng, Yongzhan,Mei, Hongxian,Liu, Yanyang,Zhang, Haiyang,Zheng, Yongzhan,Mei, Hongxian,Liu, Yanyang,Zhang, Haiyang,Zheng, Yongzhan. 2017

[17]A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection. Xu, Qijun,Zeng, Xingquan,Lin, Bin,Yuan, Hongjun,Wang, Yulin,Zhasang,Tashi, Nyima,Xu, Qijun,Zeng, Xingquan,Lin, Bin,Yuan, Hongjun,Wang, Yulin,Zhasang,Tashi, Nyima,Li, Zeqing. 2017

[18]Molecular diversity and genetic structure of 380 sweetpotato accessions as revealed by SSR markers. Yang Xin-sun,Liu Qing-chang,Yang Xin-sun,Su Wen-jin,Wang Lian-jun,Lei Jian,Chai Sha-sha. 2015

[19]High polymorphism and moderate differentiation of chub mackerel, Scomber japonicus (Perciformes: Scombridae), along the coast of China revealed by fifteen novel microsatellite markers. Cheng, Qiqun,Zhu, Yuxia,Chen, Xiaoyong.

[20]Genetic diversity and differentiation of Ankole cattle populations in Uganda inferred from microsatellite data. Kugonza, D. R.,Mpairwe, D.,Kiwuwa, G. H.,Kugonza, D. R.,Jianlin, H.,Okeyo, A. M.,Hanotte, O.,Jianlin, H.,Nabasirye, M..

作者其他论文 更多>>

微信小程序