Deciphering the Routes of invasion of Drosophila suzukii by Means of ABC Random Forest

文献类型： 外文期刊

第一作者： Fraimout, Antoine

作者： Fraimout, Antoine;Debat, Vincent;Fellous, Simon;Hufbauer, Ruth A.;Foucaud, Julien;Loiseau, Anne;Estoup, Arnaud;Hufbauer, Ruth A.;Pudlo, Pierre;Marin, Jean-Michel;Price, Donald K.;Cattel, Julien;Chen, Xiao;Depra, Marindia;Duyck, Pierre Francois;Guedot, Christelle;Kenis, Marc;Kimura, Masahito T.;Loeb, Gregory;Martinez-Sanudo, Isabel;Pascual, Marta;Richmond, Maxi Polihronakis;Shearer, Peter;Singh, Nadia;Tamura, Koichiro;Zhang, Jinping

作者机构：

关键词： Drosophila suzukii;invasion routes;random forest;approximate Bayesian computation;population genetics

期刊名称：MOLECULAR BIOLOGY AND EVOLUTION （ 影响因子：16.24； 五年影响因子：18.67 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Deciphering invasion routes from molecular data is crucial to understanding biological invasions, including identifying bottlenecks in population size and admixture among distinct populations. Here, we unravel the invasion routes of the invasive pest Drosophila suzukii using a multi-locus microsatellite dataset (25 loci on 23 worldwide sampling locations). To do this, we use approximate Bayesian computation (ABC), which has improved the reconstruction of invasion routes, but can be computationally expensive. We use our study to illustrate the use of a new, more efficient, ABC method, ABC random forest (ABC-RF) and compare it to a standard ABC method (ABC-LDA). We find that Japan emerges as the most probable source of the earliest recorded invasion into Hawaii. Southeast China and Hawaii together are the most probable sources of populations in western North America, which then in turn served as sources for those in eastern North America. European populations are genetically more homogeneous than North American populations, and their most probable source is northeast China, with evidence of limited gene flow from the eastern US as well. All introduced populations passed through bottlenecks, and analyses reveal five distinct admixture events. These findings can inform hypotheses concerning how this species evolved between different and independent source and invasive populations. Methodological comparisons indicate that ABC-RF and ABC-LDA show concordant results if ABC-LDA is based on a large number of simulated datasets but that ABC-RF out-performs ABC-LDA when using a comparable and more manageable number of simulated datasets, especially when analyzing complex introduction scenarios.

分类号： Q7

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