New insights into reovirus evolution: implications from a newly characterized mycoreovirus

文献类型: 外文期刊

第一作者: Liu, Lijiang

作者: Liu, Lijiang;Cheng, Jiasen;Fu, Yanping;Jiang, Daohong;Xie, Jiatao;Liu, Lijiang;Liu, Huiquan

作者机构:

关键词: Sclerotinia sclerotiorum;mycoreovirus;horizontal gene transfer;reovirus evolution

期刊名称:JOURNAL OF GENERAL VIROLOGY ( 影响因子:3.891; 五年影响因子:3.719 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: We performed molecular cloning and complete genome sequencing of a novel mycoreovirus, Sclerotinia sclerotiorumreovirus 1 (SsReV1), isolated from an isolate of the phytopathogenic fungus Sclerotinia sclerotiorum. SsReV1 has a genome of 28 055 bp and is composed of 11 double-stranded RNA segments. With a combination of unique molecular features, virion shape and composition, and phylogenetic analysis, SsReV1 is significantly distinct from all known reoviruses and defines a novel genus in the family Reoviridae. Interestingly, two conserved domains, double-stranded RNA binding motif (dsRBM, Pfam 00 035) and reovirus sigma C capsid protein (Reo_sigma C, pfam04 582), were identified in the genome of SsReV1, which are widespread in diverse virus lineages. Sequence comparison and phylogenetic analysis revealed that multiple cross-family horizontal gene transfer (HGT) events could occur between reoviruses and double-stranded DNA viruses, single-stranded RNA viruses and even cellular organisms. Interestingly, the dsRBM of SsReV1 was phylogenetically related to dsRNA-binding proteins of some insects, but not reoviruses. These results indicated that SsReV1 is a new taxonomic representative in Reoviridae, which provides new insights into the diversity and global ecology of reoviruses and other segmented double-stranded RNA viruses. More importantly, the present results provided evidence indicating that reoviruses indeed have HGT events with other virus lineages on a large scale and that HGT may serve as an important driving factor that plays a key role in the evolution of reoviruses.

分类号: R37

  • 相关文献

[1]Mycoreovirus genome alterations: similarities to and differences from rearrangements reported for other reoviruses. Tanaka, Toru,Eusebio-Cope, Ana,Suzuki, Nobuhiro,Sun, Liying. 2012

[2]Evolution of Xanthomonas Gene Content: Gene Gain/Loss History and Species Divergence. Jin Gu-lei,Zhang Guo-qing,Xie Guan-lin,Lou Miao-miao,Zhou Xue-ping,Li Bin,Zhu Bo,Jin Gu-lei,Zhang Guo-qing,Xie Guan-lin,Lou Miao-miao,Zhou Xue-ping,Li Bin,Zhu Bo,Jin Gu-lei,Zhu Jun,Zhang Xiao-wei,Sun Guo-chang. 2012

[3]Comparative Genomic Analysis of Bacillus amyloliquefaciens and Bacillus subtilis Reveals Evolutional Traits for Adaptation to Plant-Associated Habitats. Zhang, Nan,Yang, Dongqing,Kendall, Joshua R. A.,Shen, Qirong,Zhang, Ruifu,Zhang, Nan,Yang, Dongqing,Kendall, Joshua R. A.,Shen, Qirong,Zhang, Ruifu,Kendall, Joshua R. A.,Borriss, Rainer,Druzhinina, Irina S.,Kubicek, Christian P.,Zhang, Ruifu. 2016

[4]Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil. Chen, Qinglin,An, Xinli,Li, Hu,Su, Jianqiang,Zhu, Yong-Guan,Ma, Yibing,Zhu, Yong-Guan.

[5]Adaptive Evolution of Extreme Acidophile Sulfobacillus thermosulfidooxidans Potentially Driven by Horizontal Gene Transfer and Gene Loss. Liu, Xueduan,Liang, Yili,Guo, Xue,Xiao, Yunhua,Ma, Liyuan,Miao, Bo,Liu, Hongwei,Yin, Huaqun,Zhang, Xian,Liu, Xueduan,Liang, Yili,Miao, Bo,Liu, Hongwei,Yin, Huaqun,Peng, Deliang,Huang, Wenkun,Zhang, Yuguang,Zhang, Yuguang.

[6]A newly discovered ubiquitin-conjugating enzyme E2 correlated with the cryogenic autolysis of Volvariella volvacea. Gong, Ming,Wang, Hong,Chen, Mingjie,Bao, Dapeng,Tan, Qi,Gong, Ming,Zhu, Qiuming.

[7]Direct Visualization of Horizontal Gene Transfer in Cotton Plants. Junjie Hao,Xinhe Jia,Jiwen Yu,Shizheng Deng.

[8]The Influence of Bt-Transgenic Maize Pollen on the Bacterial Diversity in the Midgut of Chinese Honeybees, Apis cerana cerana. Geng Li-li,Shu Chang-long,Song Fu-ping,Zhang Jie,Jiang Wei-yu,Lin Yi,Dai Ping-li,Zhou Ting,Lang Zhi-hong. 2013

[9]Comparative genomics reveals cotton-specific virulence factors in flexible genomic regions in Verticillium dahliae and evidence of horizontal gene transfer from Fusarium. Chen, Jie-Yin,Gui, Yue-Jing,Zhang, Dan-Dan,Wang, Jie,Li, Nan-Yang,Zhang, Wen-Qi,Ma, Xue-Feng,Li, Ting-Gang,Zhou, Lei,Wang, Bao-Li,Bao, Yu-Ming,Dai, Xiao-Feng,Liu, Chun,Si, Kai-Wei,Huang, Jin-Qun,Liang, Yong,Yang, Lin,Zhang, Geng-Yun,Short, Dylan P. G.,Subbarao, Krishna V.. 2018

[10]Horizontal gene transfer does not occur between sFat-1 transgenic pigs and nontransgenic pigs. Tang, M. X.,Qian, L. L.,Jiang, S. W.,Cui, W. T.,Li, K.,Tang, M. X.,Qian, L. L.,Jiang, S. W.,Cui, W. T.,Li, K.,Zheng, X. M.,Hou, J..

[11]Complete sequence of the multi-resistance plasmid pV7037 from a porcine methicillin-resistant Staphylococcus aureus. Wendlandt, Sarah,Schwarz, Stefan,Li, Beibei,Ma, Zhiyong. 2013

[12]Contribution of Multiple Inter-Kingdom Horizontal Gene Transfers to Evolution and Adaptation of Amphibian-Killing Chytrid, Batrachochytrium dendrobatidis. Sun, Baofa,Xiao, Jinhua,Zhang, Peng,He, Shunmin,Huang, Dawei,Sun, Baofa,Li, Tong,Liu, Li,Murphy, Robert W.,Huang, Dawei. 2016

[13]Differentiation of 1-aminocyclopropane-1-carboxylate (ACC) deaminase from its homologs is the key for identifying bacteria containing ACC deaminase. Chang, Siping,Ye, Shuting,Chen, Mingyue,Li, Yuanyuan,Li, Shuying,An, Qianli,Lin, Li. 2015

[14]Interkingdom Gene Transfer May Contribute to the Evolution of Phytopathogenicity in Botrytis Cinerea. Zhu, Bo,Zhou, Qing,Xie, Guanlin,Zhang, Guoqing,Li, Bin,Jin, Gulei,Zhu, Bo,Zhou, Qing,Xie, Guanlin,Zhang, Guoqing,Li, Bin,Jin, Gulei,Zhang, Xiaowei,Wang, Yanli,Sun, Gunchang,Jin, Gulei. 2012

[15]Interspecies Transfer and Regulation of Pseudomonas stutzeri A1501 Nitrogen Fixation Island in Escherichia coli. Han, Yunlei,Yang, Zhirong,Han, Yunlei,Chen, Qinghua,Zhan, Yuhua,Liu, Wei,Lu, Wei,Lin, Min,Yan, Yongliang,Lu, Na,Zhu, Baoli,Chen, Qinghua,Liu, Wei.

[16]Characterization of a Gene Identified in Pathotype 5 of the Clubroot Pathogen Plasmodiophora brassicae. Zhang, H.,Zhang, H.,Feng, J.,Hwang, S. -F.,Zhang, H.,Manolii, V. P.,Strelkov, S. E..

[17]Plant transcriptomes reveal hidden guests. Wang, Guirong,Pelosi, Paolo.

[18]Genetic diversity and pathogenicity differentiation of Sclerotinia sclerotiorum on rapeseed (Brassica napus L.) in Anhui Province, China. Xu, D. F.,Li, X. L.,Pan, Y. M.,Dai, Y. L.,Li, P.,Chen, F. X.,Zhang, H. J.,Guo, M.,Gao, Z. M.,Xu, D. F.. 2014

[19]Diversity and biocontrol potential of endophytic fungi in Brassica napus. Zhang, Jing,Yang, Long,Jiang, Daohong,Li, Guoqing,Zhang, Qinghua,Zhang, Jing,Yang, Long,Jiang, Daohong,Li, Guoqing,Zhang, Lei,Chen, Weidong. 2014

[20]Transformation of the endochitinase gene Chi67-1 in Clonostachys rosea 67-1 increases its biocontrol activity against Sclerotinia sclerotiorum. Sun, Man-Hong,Zhou, Mo,Li, Shi-Dong. 2017

作者其他论文 更多>>