The complete chloroplast genome sequence of Chinese wild grape Vitis amurensis (Vitaceae: Vitis L.)

文献类型： 外文期刊

第一作者： Xie, Haikun

作者： Xie, Haikun;Jiao, Jian;Fan, Xiucai;Zhang, Ying;Jiang, Jianfu;Sun, Haisheng;Liu, Chonghuai

作者机构：

关键词： V. amurensis;High-throughput sequencing;Chloroplast genome;MITObim

期刊名称：CONSERVATION GENETICS RESOURCES （ 影响因子：0.973； 五年影响因子：0.946 ）

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收录情况： SCI

摘要： Vitis amurensis is a species of wild grape with high ecological, medicinal, and economic values. Here, the complete chloroplast genome of this plant was assembled from whole-genome high-throughput sequencing data. The circular double-stranded DNA molecule is 160,953 bp in size, including a pair of inverted repeats (26,354 bp each) separated by large (89,187 bp) and small (19,058 bp) single- copy regions. The chloroplast genome contains 133 genes, including 88 protein-coding genes (80 PCG species), 37 transfer RNA genes (29 tRNA species) and eight ribosomal RNA genes (four rRNA species), 20 of which are duplicated, including eight protein-coding, eight tRNA, and four rRNA genes. The base composition is asymmetric (30.93 % A, 19.07 % C, 18.33 % G, 31.67 % T) with an overall A + T content of 62.60 %. A phylogenetic analysis based on complete chloroplast genome sequences showed that V. amurensis is closely related to V. vinifera, V. aestivalis, and V. rotundifolia.

分类号： Q1

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