Genome-wide identification studies - A primer to explore new genes in plant species

文献类型: 外文期刊

第一作者: Tang, S.

作者: Tang, S.;Tang, S.

作者机构:

关键词: genome-wide identification; gene family; genome-wide analysis; expression pattern; protein-protein interaction; intron-exon structure

期刊名称:PLANT BIOLOGY ( 影响因子:3.081; 五年影响因子:2.974 )

ISSN: 1435-8603

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收录情况: SCI

摘要: Genome data have accumulated rapidly in recent years, doubling roughly after every 6 months due to the influx of next-generation sequencing technologies. A plethora of plant genomes are available in comprehensive public databases. This easy access to data provides an opportunity to explore genome datasets and recruit new genes in various plant species not possible a decade ago. In the past few years, many gene families have been published using these public datasets. These genome-wide studies identify and characterize gene members, gene structures, evolutionary relationships, expression patterns, protein interactions and gene ontologies, and predict putative gene functions using various computational tools. Such studies provide meaningful information and an initial framework for further functional elucidation. This review provides a concise layout of approaches used in these gene family studies and demonstrates an outline for employing various plant genome datasets in future studies.

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