Transcriptome analysis reveals novel genes involved in anthocyanin biosynthesis in the flesh of peach

文献类型： 外文期刊

第一作者： Cao, Ke

作者： Cao, Ke;Ding, Tiyu;Mao, Dongmin;Zhu, Gengrui;Fang, Weichao;Chen, Changwen;Wang, Xinwei;Wang, Lirong

作者机构：

关键词： Anthocyanin contents;Gene expression;Peach;RNA sequencing

期刊名称：PLANT PHYSIOLOGY AND BIOCHEMISTRY （ 影响因子：4.27； 五年影响因子：4.816 ）

ISSN： 0981-9428

年卷期： 2018 年 123 卷

页码：

收录情况： SCI

摘要： Peach is an important deciduous fruit tree species. Anthocyanins play an important role in fruit color formation and, through linkage analysis, previous studies have identified and mapped the key genes regulating anthocyanins' accumulation to chromosomes 3 and 5 in two different germplasms. To understand the overall regulatory network of anthocyanins biosynthesis, genes co-expressed with these key genes were identified in the red-fleshed 'Tianjin Shui Mi' and white-fleshed Hakuho' germplasms. Analysis of their flesh anthocyanin contents revealed differences 15 days before maturation. Therefore, transcriptome analysis of the flesh of fruits belonging to these two germplasms was performed to search for genes that were up-regulated at the late stage of development of 'Tianjin Shui Mi' but not of Hakuho', and identified 183 genes. These genes were also analyzed in the flesh transcriptomes of peach fruits belonging to 30 peach varieties with different anthocyanin contents at maturation, and the Pearson's correlation coefficients between their expression levels and anthocyanin contents were determined. The results showed that 66 genes were significantly correlated to anthocyanin contents, most of which previously reported as regulatory, biosynthetic, and transporter genes involved in anthocyanins' regulatory network. The results of this study enrich the understanding of key genes involved in the biological pathway regulating anthocyanins biosynthesis. The genes mostly associated with anthocyanins biosynthesis presented in this study are of great importance for molecular marker-assisted breeding.

分类号：

  • 相关文献

[1]RNA-Seq Analysis of Differentially Expressed Genes in Rice under Photooxidation. Ma, J.,Zhang, B. -B.,Wang, F.,Sun, M. -M.,Shen, W. -J.,Gao, Z.,Chen, G. -X.,Lv, C..

[2]Isolation and expression analysis of four HD-ZIP III family genes targeted by microRNA166 in peach. Zhang, C. H.,Zhang, B. B.,Ma, R. J.,Yu, M. L.,Guo, S. L.,Guo, L.. 2015

[3]Cloning and expression of genes related to the sucrose-metabolizing enzymes and carbohydrate changes in peach. Zhang, Chunhua,Shen, Zhijun,Ma, Ruijuan,Yu, Mingliang,Zhang, Yanping,Han, Jian,Korir, Nicholas Kibet.

[4]Accumulation of carotenoids and expression of carotenogenic genes in peach fruit. Cao, Shifeng,Liang, Minhua,Shi, Liyu,Shao, Jiarong,Song, Chunbo,Bian, Kun,Chen, Wei,Yang, Zhenfeng. 2017

[5]Isolation, cloning, and expression of five genes related to nitrogen metabolism in peach (Prunus persica L. Batsch). Zhang, C. H.,Zhang, B. B.,Yu, M. L.,Ma, R. J.,Song, Z. Z.,Korir, N. K..

[6]Analysis of sea-island cotton and upland cotton in response to Verticillium dahliae infection by RNA sequencing. Quan Sun,Huaizhong Jiang,Xiaoyan Zhu,Weina Wang,Xiaohong He,Yuzhen Shi,Youlu Yuan,Xiongming Du,Yingfan Cai. 2013

[7]Dissection of Myogenic Differentiation Signatures in Chickens by RNA-Seq Analysis. Li, Tingting,Zhang, Genxi,Wu, Pengfei,Liu, Qiuhong,Wang, Jinyu,Duan, Lian,Li, Guohui. 2018

[8]An efficient and rapid method to detect and verify natural antisense transcripts of animal genes. Zhang Li,Zhao Rui,Xiao Mei,An Li-long,Lin Shu-dai,Li Bi-xiao,Qiu Feng-fang,Ma Jing-e,Zhang De-xiang,Nie Qing-hua,Zhang Xi-quan. 2016

[9]Whole genome re-sequencing and transcriptome analysis of the Stylosanthes Anthracnose pathogen Colletotrichum gloeosporioides reveal its characteristics. Huang, H. P.,Huang, H. P.,Huang, J. H.,Zheng, J. L.,Yi, K. X.,Ma, S.. 2016

[10]An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.). Ye, Jiang,Yang, Yuhua,Shi, Jiaqin,Zhan, Jiepeng,Wang, Xinfa,Liu, Guihua,Wang, Hanzhong,Chen, Bo,Luo, Meizhong. 2017

[11]Hepatic transcriptome analysis of juvenile GIFT tilapia (Oreochromis niloticus), fed diets supplemented with different concentrations of resveratrol. Zheng, Yao,Wu, Wei,Hu, Gengdong,Meng, Shunlong,Fan, Limin,Song, Chao,Qiu, Liping,Chen, Jiazhang,Zhao, Zhixiang,Chen, Jiazhang,Chen, Jiazhang. 2018

[12]Integrating Small RNA Sequencing with QTL Mapping for Identification of miRNAs and Their Target Genes Associated with Heat Tolerance at the Flowering Stage in Rice. Liu, Qing,Yang, Tifeng,Zhang, Shaohong,Mao, Xingxue,Zhao, Junliang,Wang, Xiaofei,Dong, Jingfang,Liu, Bin,Liu, Qing,Yang, Tifeng,Zhang, Shaohong,Mao, Xingxue,Zhao, Junliang,Wang, Xiaofei,Dong, Jingfang,Liu, Bin,Yu, Ting. 2017

[13]Comparative Transcriptome Analysis between Broccoli (Brassica oleracea var. italica) and Wild Cabbage(Brassica macrocarpa Guss.) in Response to Plasmodiophorabrassicae during Different Infection Stages. Zhang, Xiaoli,Liu, Yumei,Fang, Zhiyuan,Li, Zhansheng,Yang, Limei,Zhuang, Mu,Zhang, Yangyong,Lv, Honghao. 2016

[14]Comparative transcriptome analyses indicate enhanced cellular protection against FMDV in PK15 cells pretreated with IFN-gamma. Fu, Yin,Zhu, Zesen,Liu, Jing,Chen, Huiyong,Fu, Yin,Zhu, Zesen,Liu, Jing,Chen, Huiyong,Chang, Huiyun,Liu, Zaixin.

[15]Transcriptome analysis reveals translational regulation in barley microspore-derived embryogenic callus under salt stress. Liu, Cheng-hong,Lu, Rui-ju,Guo, Gui-mei,He, Ting,Li, Ying-bo,Xu, Hong-wei,Gao, Run-hong,Chen, Zhi-wei,Huang, Jian-hua,Liu, Cheng-hong,Lu, Rui-ju,Guo, Gui-mei,He, Ting,Li, Ying-bo,Xu, Hong-wei,Gao, Run-hong,Chen, Zhi-wei,Huang, Jian-hua.

[16]Analysis of differentially expressed genes and adaptive mechanisms of Prunus triloba Lindl. under alkaline stress. Wang, Yongqing,Liu, Jia,Liu, Jia,Li, Qingtian. 2017

[17]Comparative transcriptome sequencing of tolerant rice introgression line and its parents in response to drought stress. Huang, Liyu,Zhang, Fan,Zhang, Fan,Wang, Wensheng,Zhou, Yongli,Fu, Binying,Li, Zhikang,Zhang, Fan. 2014

[18]De novo assembly and characterization of skin transcriptome using RNAseq in sheep (Ovis aries). Yue, Y. J.,Yang, B. H.,Yue, Y. J.,Liu, J. B.,Yang, M.,Han, J. L.,Guo, T. T.,Guo, J.,Feng, R. L.,Yang, B. H.. 2015

[19]Transcriptomics analysis of the flowering regulatory genes involved in the herbicide resistance of Asia minor bluegrass (Polypogon fugax). Zhou, Fengyan,Zhang, Yong,Wang, Mei,Gao, Tongchun,Tang, Wei. 2017

[20]MicroRNA expression profiling of primary sheep testicular cells in response to bluetongue virus infection. Du, Junzheng,Gao, Shandian,Tian, Zhancheng,Xing, Shanshan,Huang, Dexuan,Zhang, Guorui,Zheng, Yadong,Liu, Guangyuan,Luo, Jianxun,Chang, Huiyun,Yin, Hong,Yin, Hong.

作者其他论文 更多>>

微信小程序