Simple Sequence Repeat (SSR) Genetic Linkage Map of D Genome Diploid Cotton Derived from an Interspecific Cross between Gossypium davidsonii and Gossypium klotzschianum

文献类型: 外文期刊

第一作者: Joy Nyangasi Kirungu;;Yanfeng Deng

作者: Joy Nyangasi Kirungu;Yanfeng Deng;Liu, Fang;Wang, Kunbo;Xiaoyan Cai;Richard Odongo Magwanga;Zhongli Zhou;Xingxing Wang;Yuhong Wang;Zhenmei Zhang;Kunbo Wang;Fang Liu

作者机构:

关键词: wild cotton spp;genetic map;polymorphic primers;null alleles

期刊名称:INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES ( 影响因子:5.923; 五年影响因子:6.132 )

ISSN: 1422-0067

年卷期: 2018 年 19 卷 1 期

页码:

收录情况: SCI

摘要: The challenge in tetraploid cotton cultivars is the narrow genetic base and therefore, the bottleneck is how to obtain interspecific hybrids and introduce the germplasm directly from wild cotton to elite cultivars. Construction of genetic maps has provided insight into understanding the genome structure, interrelationships between organisms in relation to evolution, and discovery of genes that carry important agronomic traits in plants. In this study, we generated an interspecific hybrid between two wild diploid cottons, Gossypium davidsonii and Gossypium klotzschianum, and genotyped 188 F-2:3 populations in order to develop a genetic map. We screened 12,560 SWU Simple Sequence Repeat (SSR) primers and obtained 1000 polymorphic markers which accounted for only 8%. A total of 928 polymorphic primers were successfully scored and only 728 were effectively linked across the 13 chromosomes, but with an asymmetrical distribution. The map length was 1480.23 cM, with an average length of 2.182 cM between adjacent markers. A high percentage of the markers on the map developed, and for the physical map of G. raimondii, exhibited highly significant collinearity, with two types of duplication. High level of segregation distortion was observed. A total of 27 key genes were identified with diverse roles in plant hormone signaling, development, and defense reactions. The achievement of developing the F-2:3 population and its genetic map constructions may be a landmark in establishing a new tool for the genetic improvement of cultivars from wild plants in cotton. Our map had an increased recombination length compared to other maps developed from other D genome cotton species.

分类号:

  • 相关文献

[1]Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L.. Liu, Renzhong,Wang, Baohua,Guo, Wangzhen,Qin, Yongsheng,Zhang, Yuanming,Zhang, Tianzhen,Liu, Renzhong,Wang, Liguo. 2012

[2]Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps. Sharma, Sanjeev Kumar,McLean, Karen,Waugh, Robbie,Bryan, Glenn J.,Bolser, Daniel,Martin, David Michael Alan,de Boer, Jan,Visser, Richard G. F.,Bachem, Christian W. B.,Sonderkaer, Mads,Amoros, Walter,Munive, Susan,Simon, Reinhard,Bonierbale, Merideth,Carboni, Martin Federico,Feingold, Sergio E.,D'Ambrosio, Juan Martin,de la Cruz, German,Di Genova, Alex,Maass, Alejandro,Di Genova, Alex,Maass, Alejandro,Douches, David S.,Hamilton, John P.,Eguiluz, Maria,Guzman, Frank,Lozano, Roberto,Martinez, Diana,Ponce, Olga,Ramirez, Manuel,Torres, Yerisf,Orjeda, Gisella,Guo, Xiao,Li, Guangcun,Hackett, Christine A.,Li, Ying,Thomson, Susan J.,Zhang, Zhonghua,Huang, Sanwen,Mejia, Nilo,Nagy, Istvan,Milbourne, Dan,Jacobs, Jeanne M. E.,Jacobs, Jeanne M. E.,Veilleux, Richard E.. 2013

[3]Mapping QTLs for drought tolerance in an F-2:3 population from an inter-specific cross between Gossypium tomentosum and Gossypium hirsutum. J.Y. Zheng,G. Oluoch,M.K. Riaz Khan,X.X. Wang,X.Y. Cai,Z.L. Zhou,C.Y. Wang,Y.H. Wang,X.Y. Li,F. Liu,K.B. Wang. 2016

[4]Construction of a high-density linkage map and mapping quantitative trait loci for somatic embryogenesis using leaf petioles as explants in upland cotton (Gossypium hirsutum L.). Zhenzhen Xu,Chaojun Zhang,Xiaoyang Ge,Ni Wang,Kehai Zhou,Xiaojie Yang,Zhixia Wu,Xueyan Zhang,Chuanliang Liu,Zuoren Yang,Changfeng Li,Kun Liu,Zhaoen Yang,Yuyuan Qian,Fuguang Li.

[5]Dynamic QTL mapping for plant height in Upland cotton (Gossypium hirsutum). Shang, Lianguang,Abduweli, Abdugheni,Cai, Shihu,Liu, Fang,Wang, Kunbo,Wang, Yumei.

[6]Construction of a high-density genetic map using genotyping by sequencing (GBS) for quantitative trait loci (QTL) analysis of three plant morphological traits in upland cotton (Gossypium hirsutum L.). Haikun Qi,Huang, Qun,Yan, Gentu,Ning Wang,Wenqing Qiao,Qinghua Xu,Hong Zhou,Jianbin Shi,Gentu Yan,Qun Huang.

[7]Meta-analysis of constitutive QTLs for disease resistance in maize and its synteny conservation in the rice genome. Zhao, L.,Wang, Q. Y.,Liu, H. J.,Zhang, C. X.,Li, X. H.. 2015

[8]High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing. Jiang, Biao,Liu, Wenrui,Xie, Dasen,Peng, Qingwu,He, Xiaoming,Lin, Yu'e,Liang, Zhaojun,Jiang, Biao,Liu, Wenrui,Xie, Dasen,He, Xiaoming. 2015

[9]Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). Pandey, Manish K.,Qiao, Lixian,Feng, Suping,Khera, Pawan,Wang, Hui,Guo, Baozhu,Pandey, Manish K.,Khera, Pawan,Varshney, Rajeev K.,Pandey, Manish K.,Qiao, Lixian,Feng, Suping,Khera, Pawan,Wang, Hui,Culbreath, Albert K.,Guo, Baozhu,Wang, Ming Li,Tonnis, Brandon,Barkley, Noelle A.,Qiao, Lixian,Feng, Suping,Wang, Hui,Wang, Jianping,Holbrook, C. Corley. 2014

[10]A Consensus Linkage Map Provides Insights on Genome Character and Evolution in Common Carp (Cyprinus carpio L.). Zhang, Xiaofeng,Zheng, Xianhu,Kuang, Youyi,Li, Chao,Cao, Dingchen,Lu, Cuiyun,Sun, Xiaowen,Zhang, Yan,Zhao, Zixia,Zhao, Lan,Jiang, Li,Xu, Peng. 2013

[11]Quantitative Trait Loci Associated with Drought Tolerance in Brachypodium distachyon. Jiang, Yiwei,Pei, Zhongyou,Liu, Huifen,Jiang, Yiwei,Zhao, Xiongwei,Wang, Xicheng,Yu, Xiaoqing,Zhao, Xiongwei,Luo, Na,Garvin, David F.,Garvin, David F.. 2017

[12]High-Density Genetic Map Construction and Gene Mapping of Basal Branching Habit and Flowers per Leaf Axil in Sesame. Mei, Hongxian,Liu, Yanyang,Du, Zhenwei,Wu, Ke,Cui, Chengqi,Jiang, Xiaolin,Zhang, Haiyang,Zheng, Yongzhan. 2017

[13]Construction of a high-density SNP genetic map in fluecured tobacco based on SLAF-seq. Gong, Daping,Xu, Xiuhong,Wang, Chuanyi,Ren, Min,Wang, Chunkai,Chen, Mingli,Huang, Long,Xu, Xiuhong,Wang, Chunkai,Wang, Chunkai.

[14]Quantitative trait loci for resistance to Sharp Eyespot (Rhizoctonia cerealis) in recombinant inbred wheat lines from the cross Niavt 14 x Xuzhou 25. Jiang, Yanjie,Zhu, Fangfang,Cai, Shibin,Wu, Jizhong,Zhang, Qiaofeng. 2016

[15]Development of a large number of SSR and InDel markers and construction of a high-density genetic map based on a RIL population of pepper (Capsicum annuum L.). Zhang, Xiao-fen,Wang, Qian,Zhang, Xiao-fen,Sun, Hong-he,Xu, Yong,Chen, Bin,Yu, Shuan-cang,Geng, San-sheng.

[16]Genetic mapping of bph20(t) and bph21(t) loci conferring brown planthopper resistance to Nilaparvata lugens StAyenl in rice (Oryza sativa L.). Li, R. B.,Chen, Y. Z.,Yang, L.,Li, R. B.,Chen, Y. Z.,Yang, L.,Li, R. B.,Li, Y. R.,Chen, Y. Z.,Liu, Ch.,Ma, Z. F.,Huang, D. H.,Yang, L.,Huang, F. K.,Huang, S. Sh.,Huang, L. F.,Jiang, J. J.. 2012

[17]A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv.]. Fang, Xiaomei,Wang, Xiaoqin,Liu, Rui,Liu, Xueying,Li, Man,Huang, Mengzhu,Zhang, Zhengsheng,Dong, Kongjun,Liu, Tianpeng,He, Jihong,Ren, Ruiyu,Zhang, Lei,Yang, Tianyu. 2016

[18]Construction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.). Chen, Hui,Song, Yue,Li, Lei-Ting,Wu, Jun,Zhang, Shao-Ling,Khan, M. Awais,Korban, Schuyler S.,Li, Xiu-Gen,Korban, Schuyler S..

[19]Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Wang, Long,Wu, Jun,Yin, Hao,Zhang, Shaoling,Wang, Long,Li, Xiugen,Wang, Lei,Xue, Huabai.

[20]Genetic verification of doubled haploid Japanese flounder, Paralichthys olivaceus by genotyping telomeric microsatellite loci. Liu, Yongxin,Liu, Haijin,Wang, Guixing,Wang, Yufen,Si, Fei,Sun, Zhaohui,Zhang, Xiaoyan,Liu, Yi,Hou, Jilun. 2012

作者其他论文 更多>>
  • Health assessment based on exposure to microplastics in tropical agricultural soil

    作者:Lin, Bigui;Wang, Luya;Liu, Beibei;Liu, Fang;Wu, Lin;Wei, Chaoxian;Lin, Bigui;Wang, Luya;Liu, Beibei;Wu, Lin;Wei, Chaoxian;Lin, Bigui;Wang, Luya;Liu, Beibei;Wu, Lin;Wei, Chaoxian;Chen, Qiyu;Liu, Zhilei;Chen, Xichao;Zhang, Zongyao;Wen, Shaobai;Liu, Fang

    关键词:Microplastics; Agricultural soil; Size distribution analysis; Dimensionality of MPs; Health exposure assessment

  • Widespread incomplete lineage sorting and introgression shaped adaptive radiation in the Gossypium genus

    作者:Xu, Yanchao;Zhou, Zhongli;Cai, Xiaoyan;Umer, Muhammad Jawad;Hou, Yuqing;Wang, Yuhong;Wang, Kunbo;Yu, Shuxun;Liu, Fang;Xu, Yanchao;Wei, Yangyang;Liu, Yuling;Peng, Renhai;Xu, Yanchao;Cai, Xiaoyan;Boden, Scott A.;Safdar, Luqman B.;Jin, Dingsha;Wall, Sarah Brooke;Zhang, Baohong;Liu, Fang

    关键词:cotton speciation; Gossypium genus; incomplete lineage sorting; ILS; phylogenetic analysis; gene tree resolution

  • MCSS: microbial community simulator based on structure

    作者:Hui, Xingqi;Liu, Fang;Hui, Xingqi;Yang, Jinbao;Pan, Weihua;Yang, Jinbao;Sun, Jinhuan;Liu, Fang

    关键词:metagenome; microbiome communities; long reads; simulator; assembly

  • Linkage and association mapping in multi-parental populations reveal the genetic basis of carotenoid variation in maize kernels

    作者:Yin, Pengfei;Fu, Xiuyi;Feng, Haiying;Yang, Yanyan;Xu, Jing;Zhang, Xuan;Wang, Min;Ji, Shenghui;Zhao, Binghao;Fang, Hui;Du, Xiaoxia;Li, Yaru;Hu, Shuting;Li, Kun;Xu, Shutu;Li, Zhigang;Li, Jiansheng;Yang, Xiaohong;Yin, Pengfei;Fu, Xiuyi;Feng, Haiying;Yang, Yanyan;Xu, Jing;Zhang, Xuan;Wang, Min;Ji, Shenghui;Zhao, Binghao;Fang, Hui;Du, Xiaoxia;Li, Yaru;Hu, Shuting;Li, Kun;Xu, Shutu;Li, Zhigang;Li, Jiansheng;Yang, Xiaohong;Fu, Xiuyi;Wang, Yuandong;Liu, Fang;Li, Jiansheng;Yang, Xiaohong;Xiao, Yingni;Yang, Xiaohong

    关键词:Carotenoids; Linkage analysis; Association mapping; Plastid terminal oxidase

  • Genetic Analysis of Cotton Fiber Traits in Gossypium Hybrid Lines

    作者:Wang, Heng;Cai, Xiaoyan;Umer, Muhammad Jawad;Xu, Yanchao;Hou, Yuqing;Zheng, Jie;Liu, Fang;Wang, Kunbo;Zhou, Zhongli;Chen, Mengshan;Ma, Shuping;Yu, Jingzhong;Cai, Xiaoyan;Zheng, Jie;Liu, Fang;Liu, Fang;Cai, Xiaoyan;Hou, Yuqing;Zheng, Jie;Liu, Fang

    关键词:

  • Transcriptional landscape of cotton roots in response to salt stress at single-cell resolution

    作者:Li, Pengtao;Liu, Qiankun;Wei, Yangyang;Liu, Yuling;Lu, Quanwei;Hu, Nan;Wang, Tao;Cheng, Shuang;Li, Zhaoguo;Zhao, Zilin;Li, Yanfang;Peng, Renhai;Li, Pengtao;Liu, Qiankun;Xing, Chaozhu;Han, Jiangping;Cai, Xiaoyan;Zhou, Zhongli;Wang, Kunbo;Liu, Fang;Li, Pengtao;Xing, Chaozhu;Liu, Fang;Peng, Renhai;Liu, Qiankun;Cheng, Shuang;Li, Zhaoguo;Peng, Renhai;Xu, Zhongping;Zhu, Xiangqian;Jin, Shuangxia;Ding, Fang;Zhang, Baohong

    关键词:cotton; salt stress; scRNA-seq; root cell types; virus-induced gene silencing

  • Assessment of benthic ecological status and heavy metal contamination in an estuarine intertidal mudflat in the Northern Bohai Sea

    作者:Li, Ang;Li, Jiaqi;Liu, Lulei;Xue, Suyan;Zhang, Meng;Tang, Yuze;Mao, Yuze;Li, Ang;Li, Jiaqi;Zhu, Ling;Liu, Lulei;Xue, Suyan;Zhang, Meng;Tang, Yuze;Mao, Yuze;Liu, Fang

    关键词:Geligang; Macrobenthos; Benthic ecological quality; M-AMBI; Heavy metals