文献类型： 外文期刊
第一作者： Alexandrov, Nickolai
作者： Alexandrov, Nickolai;Mansueto, Locedie;Palis, Kevin;Fuentes, Roven Rommel;Ulat, Victor Jun;Chebotarov, Dmytro;Mauleon, Ramil;Hamilton, Ruaraidh Sackville;McNally, Kenneth L.;Tai, Shuaishuai;Zhang, Gengyun;Wang, Wensheng;Li, Zhikang
作者机构：
期刊名称：NUCLEIC ACIDS RESEARCH （ 影响因子：16.971； 五年影响因子：15.542 ）
ISSN： 0305-1048
年卷期： 2015 年 43 卷 D1 期
页码：
收录情况： SCI
摘要： We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/), which consists of Oracle database having a total number of rows with SNP genotypes close to 60 billion (20 M SNPs x 3 K rice lines) and web interface for convenient querying. The database allows quick retrieving of SNP alleles for all varieties in a given genome region, finding different alleles from predefined varieties and querying basic passport and morphological phenotypic information about sequenced rice lines. SNPs can be visualized together with the gene structures in JBrowse genome browser. Evolutionary relationships between rice varieties can be explored using phylogenetic trees or multidimensional scaling plots.
分类号：
- 相关文献
作者其他论文 更多>>
-
Optimizing the Total Spikelets Increased Grain Yield in Rice
作者：Liu, Kun;Zhang, Yu;Li, Shouguo;Zhang, Jingli;Deng, Shan;Zhang, Yiying;Huang, Jingyan;Ren, Li;Chu, Yunxia;Zhao, Hong;Chen, Hairong;Liu, Kun;Zhang, Yu;Li, Shouguo;Zhang, Jingli;Deng, Shan;Zhang, Yiying;Huang, Jingyan;Ren, Li;Chu, Yunxia;Zhao, Hong;Chen, Hairong;Zhang, Kaixi;Cui, Jiarong;Li, Zhikang;Huang, Jian
关键词：rice (Oryza sativa L.); high yield; rice varieties with various yield types; total spikelets; total nitrogen application rate
-
Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57
作者：Lei, Yuanbao;Zhang, Yunjiang;Ma, Wendong;Lei, Yuanbao;Xu, Linyun;Zhou, Ziqi;Yang, Dechen;Zhang, Fan;Zhou, Yongli;Zhao, Xiuqin;Wang, Wensheng;Li, Zhikang;Xu, Jianlong;Zheng, Tianqing;Lei, Yuanbao;Liu, Bailong;Li, Jie;Quan, Pengyu;Quan, Guangjun;Faruquee, Muhiuddin;Yang, Dechen;Wang, Wensheng;Xu, Jianlong;Zheng, Tianqing;Xu, Jianlong
关键词：
-
IFI16 Positively Regulates RIG-I-Mediated Type I Interferon Production in a STING-Independent Manner
作者：Shi, Xibao;Wei, Menglu;Feng, Yuwen;Yang, Yuanhao;Zhang, Xiaozhuan;Chen, Hao;Xing, Yuqi;Wang, Keqi;Wang, Wensheng;Wang, Li;Zhang, Gaiping;Wang, Aiping;Zhang, Gaiping;Zhang, Gaiping;Zhang, Gaiping;Shi, Xibao;Zhang, Gaiping
关键词：IFN-gamma-inducible protein 16; interferon gene-stimulating protein; retinoic acid-inducible gene I; type I interferon
-
Automated collection of facial temperatures in dairy cows via improved UNet
作者：Shu, Hang;Wang, Kaiwen;Guo, Leifeng;Wang, Wensheng;Shu, Hang;Bindelle, Jerome;Wang, Kaiwen
关键词：Precision livestock farming; Animal welfare; Deep learning; Body surface temperature; Heat stress
-
UAV-based simultaneous localization and mapping in outdoor environments: A systematic scoping review
作者：Wang, Kaiwen;Valente, Joao;Wang, Kaiwen;Wang, Wensheng;Kooistra, Lammmert;Pan, Ruoxi;Valente, Joao
关键词：SLAM; UAVs
-
Thidiazuron combined with cyclanilide modulates hormone pathways and ROS systems in cotton, increasing defoliation at low temperatures
作者：Shu, Hongmei;Sun, Shangwen;Wang, Xiaojing;Yang, Changqin;Zhang, Guowei;Li, Zhikang;Liang, Ting;Liu, Ruixian;Chen, Jian;Han, Huanyong
关键词：cyclanilide; thidiazuron; cotton; low temperature; defoliation
-
Functional differentiation and genetic diversity of rice cation exchanger (CAX) genes and their potential use in rice improvement
作者：Lian, Shangshu;Chen, Yanjun;Zhou, Yanyan;Feng, Ting;Chen, Jingsi;Liang, Lunping;Qian, Yingzhi;Huang, Tao;Zhang, Chenyang;Wu, Fengcai;Li, Zhikang;Li, Min;Lian, Shangshu;Zou, Wenli;Li, Zhikang;Meng, Lijun
关键词：
