Assembly of an early-matured japonica (Geng) rice genome, Suijing18, based on PacBio and Illumina sequencing
文献类型： 外文期刊
第一作者： Nie, Shou-Jun
作者： Nie, Shou-Jun;Liu, Yu-Qiang;Gao, Shi-Wei;Liu, Qing;Chang, Hui-Lin;Wang, Chun-Chao;Xu, Tian-Tian;Zheng, Tian-Qing;Xu, Jian-Long;Li, Zhi-Kang;Chen, Yu-Bao;Yan, Peng-Cheng;Peng, Wei;Zheng, Tian-Qing;Xu, Jian-Long;Li, Zhi-Kang
作者机构：
期刊名称：SCIENTIFIC DATA （ 影响因子：6.444； 五年影响因子：9.051 ）
ISSN： 2052-4463
年卷期： 2017 年 4 卷
页码：
收录情况： SCI
摘要： The early-matured japonica (Geng) rice variety, Suijing18 (SJ18), carries multiple elite traits including durable blast resistance, good grain quality, and high yield. Using PacBio SMRT technology, we produced over 25 Gb of long-read sequencing raw data from SJ18 with a coverage of 62 x. Using Illumina paired-end whole-genome shotgun sequencing technology, we generated 59 Gb of short-read sequencing data from SJ18 (23.6 Gb from a 200 bp library with a coverage of 59 x and 35.4 Gb from an 800 bp library with a coverage of 88 x). With these data, we assembled a single SJ18 genome and then generated a set of annotation data. These data sets can be used to test new programs for variation deep mining, and will provide new insights into the genome structure, function, and evolution of SJ18, and will provide essential support for biological research in general.
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