Diversity characterization and association analysis of agronomic traits in a Chinese peanut (Arachis hypogaea L.) mini-core collection

文献类型： 外文期刊

第一作者： Jiang, Huifang

作者： Jiang, Huifang;Huang, Li;Ren, Xiaoping;Chen, Yuning;Zhou, Xiaojing;Huang, Jiaquan;Lei, Yong;Yan, Liying;Wan, Liyun;Liao, Boshou;Xia, Youlin

作者机构：

关键词： Arachis hypogaea L.;association analysis;mini-core collection;peanut

期刊名称：JOURNAL OF INTEGRATIVE PLANT BIOLOGY （ 影响因子：7.061； 五年影响因子：6.002 ）

ISSN： 1672-9072

年卷期： 2014 年 56 卷 2 期

页码：

收录情况： SCI

摘要： Association mapping is a powerful approach for exploring the molecular basis of phenotypic variations in plants. A peanut (Arachis hypogaea L.) mini-core collection in China comprising 298 accessions was genotyped using 109 simple sequence repeat (SSR) markers, which identified 554 SSR alleles and phenotyped for 15 agronomic traits in three different environments, exhibiting abundant genetic and phenotypic diversity within the panel. A model-based structure analysis assigned all accessions to three groups. Most of the accessions had the relative kinship of less than 0.05, indicating that there were no or weak relationships between accessions of the mini-core collection. For 15 agronomic traits in the peanut panel, generally the Q+K model exhibited the best performance to eliminate the false associated positives compared to the Q model and the general linear model-simple model. In total, 89 SSR alleles were identified to be associated with 15 agronomic traits of three environments by the Q+K model-based association analysis. Of these, eight alleles were repeatedly detected in two or three environments, and 15 alleles were commonly detected to be associated with multiple agronomic traits. Simple sequence repeat allelic effects confirmed significant differences between different genotypes of these repeatedly detected markers. Our results demonstrate the great potential of integrating the association analysis and marker-assisted breeding by utilizing the peanut mini-core collection.

分类号：

  • 相关文献

[1]Genetic discovery for oil production and quality in sesame. Zhang, Yanxin,Wang, Linhai,Li, Donghua,Zhu, Xiaodong,Zhu, Xiaofeng,Gao, Yuan,Zhang, Xiurong,Liu, Kunyan,Feng, Qi,Zhao, Yan,Zhao, Qiang,Li, Wenjun,Fan, Danlin,Lu, Yiqi,Zhou, Congcong,Zhu, Chuanrang,Tian, Qilin,Wen, Ziruo,Weng, Qijun,Han, Bin,Huang, Xuehui,Zhang, Xianmei,Liu, Lifeng,Tang, Xiumei,Zhong, Ruichun.

[2]Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection. Zhang, Yanxin,Zhang, Xiurong,Che, Zhuo,Wang, Linhai,Wei, Wenliang,Li, Donghua,Che, Zhuo. 2012

[3]Genotypic and phenotypic characterization of genetic differentiation and diversity in the USDA rice mini-core collection. Jia, Limeng,Wu, Dianxing,Li, Xiaobai,Li, Xiaobai,Agrama, Hesham,Jia, Limeng,Moldenhauer, Karen,Li, Xiaobai,Yan, Wengui,Jia, Limeng,Jia, Melissa,Jackson, Aaron,McClung, Anna,Hu, Biaolin.

[4]EST sequencing and SSR marker development from cultivated peanut (Arachis hypogaea L.). Li, Meng Jun,Xiao, Han,Wang, Xing Jun,Xia, Han,Zhao, Chuan Zhi,Bi, Yu Ping,Tang, Rong Hua. 2010

[5]Functional expression analysis of an acyl-ACP thioesterase FatB1 from Arachis hypogaea L. seeds in Escherichia coli. Chen, Gao,He, Qingfang,Xuan, Ning,Peng, Zhenying,Shan, Lei,Tang, Guiying,Bi, Yuping,He, Qingfang,Chen, Gao,He, Qingfang,Xuan, Ning,Peng, Zhenying,Shan, Lei,Tang, Guiying,Bi, Yuping,Chen, Gao,He, Qingfang,Xuan, Ning,Peng, Zhenying,Shan, Lei,Tang, Guiying,Bi, Yuping. 2012

[6]The K+/H+ Antiporter AhNHX1 Improved Tobacco Tolerance to NaCl Stress by Enhancing K+ Retention. Zhang, Wei-Wei,Meng, Jing-Jing,Yang, Sha,Guo, Feng,Li, Xin-Guo,Xing, Jin-Yi,Wan, Shu-Bo. 2017

[7]Cloning and sequence analysis of putative type II fatty acid synthase genes from Arachis hypogaea L.. Li, Meng-Jun,Li, Ai-Qin,Xia, Han,Zhao, Chuan-Zhi,Li, Chang-Sheng,Wan, Shu-Bo,Bi, Yu-Ping,Wang, Xing-Jun. 2009

[8]Cloning and expression analysis of peanut (Arachis hypogaea L.) CHI gene. Zhang, Yue,Wang, Xingjun,Zhang, Yue,Xia, Han,Zhao, Chuanzhi,Li, Aiqin,Wang, Xingjun,Yuan, Mei. 2012

[9]Isolation and expression analysis of LEA genes in peanut (Arachis hypogaea L.). Su, Lei,Bi, Yu-Pin,Wang, Xing-Jun,Su, Lei,Zhao, Chuan-Zhi,Bi, Yu-Pin,Wan, Shu-Bo,Xia, Han,Wang, Xing-Jun,Su, Lei,Zhao, Chuan-Zhi,Bi, Yu-Pin,Wan, Shu-Bo,Xia, Han,Wang, Xing-Jun,Su, Lei,Zhao, Chuan-Zhi,Bi, Yu-Pin,Wan, Shu-Bo,Xia, Han,Wang, Xing-Jun.

[10]Agrobacterium-mediated genetic transformation of peanut and the efficient recovery of transgenic plants. Chen, Mingna,Yang, Qingli,Wang, Tong,Chen, Na,Pan, Lijuan,Chi, Xiaoyuan,Yang, Zhen,Wang, Mian,Yu, Shanlin,Chi, Xiaoyuan. 2015

[11]Controlled Release Study on Microencapsulated Mixture of Fipronil and Chlorpyrifos for the Management of White Grubs (Holotrichia parallela) in Peanuts (Arachis hypogaea L.). Yang, Daibin,Yan, Xiaojing,Yuan, Huizhu,Li, Guangxing. 2014

[12]Expressed sequence tags in cultivated peanut (Arachis hypogaea): Discovery of genes in seed development and response to Ralstonia solanacearum challenge. Huang, Jiaquan,Yan, Liying,Lei, Yong,Jiang, Huifang,Ren, Xiaoping,Liao, Boshou.

[13]Assessment of Photochemical Reflectance Index as a Tool for Evaluation of Chlorophyll Fluorescence Parameters in Cotton and Peanut Cultivars Under Water Stress Condition. Shahenshah,Akihiro, Isoda,Yoshizumi, Yasuda,Li Mao-song. 2010

[14]Phytotoxicity of Silver Nanoparticles to Peanut (Arachis hypogaea L.): Physiological Responses and Food Safety. Rui, Mengmeng,Yang, Jie,Jiang, Fuping,Pan, Yue,Xiang, Zhiqian,Hao, Yi,Rui, Yukui,Rui, Mengmeng,Tang, Xinlian,Ma, Chuanxin,Xing, Baoshan,Ma, Chuanxin,Cao, Weidong,Ma, Chuanxin. 2017

[15]Unraveling the Root Proteome Changes and Its Relationship to Molecular Mechanism Underlying Salt Stress Response in Radish (Raphanus sativus L.). Sun, Xiaochuan,Wang, Yan,Xu, Liang,Li, Chao,Zhang, Wei,Luo, Xiaobo,Jiang, Haiyan,Liu, Liwang,Sun, Xiaochuan,Sun, Xiaochuan,Wang, Yan,Xu, Liang,Luo, Xiaobo,Liu, Liwang. 2017

[16]A dCAPS marker developed from a stress associated protein gene TaSAP7-B governing grain size and plant height in wheat. Wang Yi-xue,Li Run-zhi,Xu Qiao-fang,Chang Xiao-ping,Hao Chen-yang,Jing Rui-lian. 2018

[17]Genome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm. Chen, Jiafa,Ding, Junqiang,Wu, Jianyu,Chen, Jiafa,Ding, Junqiang,Wu, Jianyu,Wu, Jianyu,Chen, Jiafa,Shrestha, Rosemary,Zheng, Hongjian,Mu, Chunhua,Mahuku, George,Zheng, Hongjian,Mu, Chunhua,Mahuku, George. 2016

[18]Association Analysis of Grain-setting Rates in Apical and Basal Spikelets in Bread Wheat (Triticum aestivum L.). Guo, Jie,Zhang, Yong,Zhang, Boqiao,Cheng, Xiaoming,Cheng, Kai,Cheng, Shunhe,Zhang, Xueyong,Hao, Chenyang,Guo, Jie,Shi, Weiping,Zhang, Jingjuan,Xu, Yanhao. 2015

[19]Porcine LEM domain-containing 3: Molecular cloning, functional characterization, and polymorphism associated with ear size. Liang Jing,Li Na,Zhang Long-chao,Wang Li-gang,Liu Xin,Zhao Ka-bin,Yan Hua,Pu Lei,Zhang Yue-bo,Shi Hui-bi,Wang Li-xian,Li Na,Zhang Qin. 2016

[20]Associations of IGF2 and DRD2 polymorphisms with laying traits in Muscovy duck. Nie, Qinghua. 2017

作者其他论文 更多>>

微信小程序