Association Analysis for Quality Traits in a Diverse Panel of Chinese Sesame (Sesamum indicum L.) Germplasm

文献类型： 外文期刊

第一作者： Wei, Wenliang

作者： Wei, Wenliang;Zhang, Yanxin;Lu, Haixia;Li, Donghua;Wang, Linhai;Zhang, Xiurong

作者机构：

关键词： Association mapping;nutritional trait;population structure;Sesamum indicum L

期刊名称：JOURNAL OF INTEGRATIVE PLANT BIOLOGY （ 影响因子：7.061； 五年影响因子：6.002 ）

ISSN： 1672-9072

年卷期： 2013 年 55 卷 8 期

页码：

收录情况： SCI

摘要： The main objective of this study was to evaluate the potential of a sesame (Sesamum indicum L.) panel for association analysis, and investigate the genetic basis of oil content (OC), protein content, oleic acid concentration, and linoleic acid concentration using association mapping. A panel of 216 sesame accessions was phenotyped in a multi-environment trial and fingerprinted with 608 polymorphic loci produced by 79 primers, including simple sequence repeats (SSRs), sequence-related amplified polymorphisms (SRAPs), and amplified fragment length polymorphisms (AFLPs). Population structure analysis revealed two subgroups in the population. The Q model performed better for its ability to re-identify associations for the four traits at highly significant P-values compared to the other three mixed models. And a total of 35 and 25 associations for the four traits in 2010 and 2011 were identified, respectively, with the Q model after Bonferroni correction. Among those associations, only one for OC was re-identified in two environments, and several markers associated simultaneously with multiple traits were discovered. These results suggest the power and stability of the Q model for association analysis of nutritional traits in this sesame panel for its slight population stratification and familial relationship, which could aid in dissecting complex traits, and could help to develop strategies for improving nutritional quality.

分类号：

  • 相关文献

[1]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

[2]Association Analysis of the Amino Acid Contents in Rice. Zhao, Weiguo,Chung, Jong-Wook,Park, Yong-Jin,Zhao, Weiguo,Park, Eun-Jin,Chung, Ill-Min,Ahn, Joung-Kuk,Kim, Gwang-Ho,Zhao, Weiguo. 2009

[3]An analysis of population structure and linkage disequilibrium using multilocus data in 187 maize inbred lines (Retracted article. See vol. 28, pg. 135, 2011). Xie, Chuanxiao,Li, Mingshun,Li, Xinhai,Xiao, Muji,Hao, Zhuanfang,Zhang, Shihuang,Warburton, Marilyn,Zhao, Qi. 2008

[4]Genome-wide SSR-based association mapping for fiber quality in nation-wide upland cotton inbreed cultivars in China. Nie, Xinhui,Huang, Cong,Zhao, Wenxia,Shen, Chao,Zhang, Beibei,Wang, Hantao,Yan, Zhenhua,Dai, Baoshen,Wang, Maojun,Zhang, Xianlong,Lin, Zhongxu,Nie, Xinhui,You, Chunyuan,Li, Wu. 2016

[5]A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection. Xu, Qijun,Zeng, Xingquan,Lin, Bin,Yuan, Hongjun,Wang, Yulin,Zhasang,Tashi, Nyima,Xu, Qijun,Zeng, Xingquan,Lin, Bin,Yuan, Hongjun,Wang, Yulin,Zhasang,Tashi, Nyima,Li, Zeqing. 2017

[6]Genetic diversity and association mapping in a collection of selected Chinese soybean accessions based on SSR marker analysis. Li, Ying-Hui,Chang, Ru-Zhen,Qiu, Li-Juan,Smulders, Marinus J. M..

[7]Genome-wide association study for kernel weight-related traits using SNPs in a Chinese winter wheat population. Chen, Guangfeng,Zhang, Han,Deng, Zhiying,Tian, Jichun,Chen, Guangfeng,Li, Dongmei,Wang, Mingyou,Zhang, Han,Wu, Rugang.

[8]Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna. unguiculata ssp. sesquipedialis) germplasm: Implications for domestication history and genome wide association studies. Xu, P.,Wu, X.,Wang, B.,Liu, Y.,Lu, Z.,Wang, S.,Li, G.,Luo, J.,Ehlers, J. D.,Close, T. J.,Roberts, P. A..

[9]Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing. Zhang, Yanxin,Wang, Linhai,Li, Donghua,Ding, Xia,Zhang, Xiurong,Xin, Huaigen,Ma, Chouxian,Hong, Weiguo. 2013

[10]Association mapping analysis of fiber yield and quality traits in Upland cotton (Gossypium hirsutum L.). Mulugeta Seyoum Ademe,Du, Xiongming,Jia, Yinhua,Shoupu He,Zhaoe Pan,Junling Sun,Qinglian Wang,Hongde Qin,Jinhai Liu,Hui Liu,Jun Yang,Dongyong Xu,Jinlong Yang,Zhiying Ma,Jinbiao Zhang,Zhikun Li,Zhongmin Cai,Xuelin Zhang,Xin Zhang,Aifen Huang,Xianda Yi,Guanyin Zhou,Lin Li,Haiyong Zhu,Baoyin Pang,Liru Wang,Yinhua Jia,Xiongming Du.

[11]Association of Candidate Genes With Submergence Response in Perennial Ryegrass. Wang, Xicheng,Wang, Xicheng,Jiang, Yiwei,Pei, Zhongyou,Liu, Huifen,Jiang, Yiwei,Zhao, Xiongwei,Xiao, Xiangye,Zhao, Xiongwei,Song, Xin. 2017

[12]Identification of genome-wide single-nucleotide polymorphisms (SNPs) associated with tolerance to chromium toxicity in spring wheat (Triticum aestivum L.). Almas, Fakhrah,Hassan, Adeel,Bibi, Arfa,Ali, Masab,Lateef, Sadia,Mahmood, Tariq,Quraishi, Umar Masood,Rasheed, Awais. 2018

[13]Genetic dissection of seminal root architecture in elite durum wheat germplasm. Sanguineti, M. C.,Li, S.,Maccaferri, M.,Corneti, S.,Rotondo, F.,Chiari, T.,Tuberosa, R.. 2007

[14]Association Mapping for Aluminum Tolerance in a Core Collection of Rice Landraces. Zhang, Peng,Zhong, Kaizhen,Tong, Hanhua,Zhang, Peng,Shahid, Muhammad Qasim,Li, Jinquan,Li, Jinquan. 2016

[15]Genetic diversity and marker-trait associations in a collection of Pak-choi (Brassica rapa L. ssp chinensis Makino) Accessions. Yu, Shuancang,Zhang, Fenglan,Wang, Xiaoyi,Zhao, Xiuyun,Zhang, Deshuang,Yu, Yangjun,Xu, Jiabing. 2010

[16]Association Mapping of Grain Weight, Length and Width in Barley (Hordeum vulgare) Breeding Germplasm. Liu, X.,Ma, L.,Feng, Z.,Lai, Yunping,Yu, Y.,Wan, H.,Zhang, Z.,Wang, L.,Leng, Y.,Yang, W.,Ma, L.. 2017

[17]Association mapping of quantitative trait loci for yield-related agronomic traits in rice (Oryza sativa L.). Xu Fei-fei,Huang Yan,Tong Chuan,Chen Ya-ling,Bao Jin-song,Jin Liang. 2016

[18]Design of a Brassica rapa core collection for association mapping studies. Zhao, Jianjun,Del Carpio, Dunia Pino,Basnet, Ram Kumar,Zhang, Ningwen,Li, Fei,Bucher, Johan,Visser, Richard G. F.,Bonnema, Guusje,Zhao, Jianjun,Artemyeva, Anna,Gao, Jie,Li, Fei,Wang, Xiaowu.

[19]Genome-wide association study reveals the genetic architecture of flowering time in rapeseed (Brassica napus L.). Xu, Liping,Hu, Kaining,Wen, Jing,Yi, Bin,Shen, Jinxiong,Ma, Chaozhi,Tu, Jinxing,Fu, Tingdong,Zhang, Zhenqian,Guan, Chunyun,Chen, Song,Hua, Wei,Li, Jiana.

[20]Association mapping of dynamic developmental plant height in common wheat. Zhang, Jianan,Hao, Chenyang,Ren, Qian,Chang, Xiaoping,Jing, Ruilian,Zhang, Jianan,Zhang, Jianan,Liu, Guiru.

作者其他论文 更多>>

微信小程序