Association analysis of physicochemical traits on eating quality in rice (Oryza sativa L.)

文献类型： 外文期刊

第一作者： Zhao, Wei-Guo

作者： Zhao, Wei-Guo;Kwon, Soon-Wook;Park, Yong-Jin;Zhao, Wei-Guo;Chung, Jong-Wook;Ma, Kyung-Ho;Kwon, Soon-Wook;Park, Yong-Jin;Lee, Jeong-Heui

作者机构：

关键词： Rice;Association mapping (AM);Linkage disequilibrium (LD);Population structure;Eating quality

期刊名称：EUPHYTICA （ 影响因子：1.895； 五年影响因子：2.181 ）

ISSN： 0014-2336

年卷期： 2013 年 191 卷 1 期

页码：

收录情况： SCI

摘要： Improvement of rice eating quality is an important objective in current breeding programs. In this study, 130 rice accessions of diverse origin were genotyped using 170 SSR markers to identify marker-trait associations with physicochemical traits on eating quality. Analysis of population structure revealed four subgroups in the population. Linkage disequilibrium (LD) patterns and distributions are of fundamental importance for genome-wide mapping associations. The mean r (2) value for all intrachromosomal loci pairs was 0.0940. LD between linked markers decreased with distance. Marker-trait associations were investigated using the unified mixed-model approach, considering both population structure (Q) and kinship (K). In total, 101 marker-trait associations (p < 0.05) were identified using 52 different SSR markers covering 12 chromosomes. The results suggest that association mapping in rice is a viable alternative to quantitative trait loci mapping, and detection of new marker-trait associations associated with rice eating quality will also provide important information for marker-assisted breeding and functional analysis of rice grain quality.

分类号：

  • 相关文献

[1]Mapping QTLs for improving grain yield using the USDA rice mini-core collection. Li, Xiaobai,Jia, Limeng,Wu, Dianxing,Li, Xiaobai,Agrama, Hesham,Jia, Limeng,Moldenhauer, Karen,Li, Xiaobai,Yan, Wengui,Jia, Limeng,Jackson, Aaron,McClung, Anna,Shen, Xihong,Yeater, Kathleen.

[2]Genetic Improvement of Japonica Rice Variety Wuyujing 3 for Stripe Disease Resistance and Eating Quality by Pyramiding Stv-b(i) and Wx-mq. Chen Tao,Wu Hao,Zhang Ya-dong,Zhu Zhen,Zhao Qi-yong,Zhou Li-hui,Yao Shu,Zhao Ling,Yu Xin,Zhao Chun-fang,Wang Cai-lin,Chen Tao. 2016

[3]Mapping of quantitative trait loci controlling physico-chemical properties of rice grains (Oryza sativa L.). Li, ZF,Wan, JM,Xia, JF,Yano, M.

[4]Genetic diversity and population structure in a rice drought stress panel. Tabanao, Dindo A.,Pocsedio, Arnel E.,Yabes, Jonalyn C.,Nino, Marjohn C.,Millas, Reneth A.,Sevilla, Neah Rosandra L.,Xiao Yulong,Yu, Jianming.

[5]Molecular Diversity and Association Analysis of Drought and Salt Tolerance in Gossypium hirsutum L. Germplasm. JIA Yin-hua,SUN Jun-ling,WANG Xi-wen,ZHOU Zhong-li,PAN Zao-e,HE Shou-pu,PANG Bao-yin,WANG Li-ru,DU Xiong-ming. 2014

[6]Research progress on the breeding of japonica super rice varieties in Jiangsu Province, China. Wang Cai-lin,Zhang Ya-dong,Zhu Zhen,Chen Tao,Zhao Qing-yong,Zhong Wei-gong,Yang Jie,Yao Shu,Zhou Li-hui,Zhao Ling,Li Yu-sheng. 2017

[7]DEVELOPMENT OF STS MARKERS FOR WAXY GENE ALLELIC VARIATION IDENTIFICATION IN FOXTAIL MILLET. Jia, X. P.,Dong, P. H.,Yu, F. Y.,Quan, J. Z.,Bai, H.,Dong, Z. P.. 2015

[8]Myofiber characteristics and eating quality of three major muscles from Chinese Simmental cattle. Lang, Yu-Miao,Wang, Yong-Feng,Sun, Bao-Zhong,Zhang, Song-Shan,Xie, Peng,Li, Hai-Peng,Sha, Kun,Zhang, Li.

[9]Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wx(b) supercript stop pre-mRNAs in rice (Oryza sativa L.). Zeng, Dali,Yan, Meixian,Wang, Yonghong,Liu, Xinfang,Qian, Qian,Li, Jiayang.

[10]DNA markers for eating quality of indica rice in Indonesia. Lestari, Puji,Chu, Sang-Ho,Kim, Backki,Piao, Rihua,Koh, Hee-Jong,Lestari, Puji,Chu, Sang-Ho,Kim, Backki,Piao, Rihua,Koh, Hee-Jong,Lestari, Puji,Reflinur,Sutrisno,Jiang, Wenzhu,Chu, Sang-Ho,Chin, Joong-Hyeon,Kusbiantoro, Bram,Cho, Young-Chan,Luo, Zhixiang.

[11]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

[12]Analysis of genetic diversity and population structure in a tomato (Solanum lycopersicum L.) germplasm collection based on single nucleotide polymorphism markers. Wang, T.,Wang, T.,Zou, Q. D.,Qi, S. Y.,Wang, X. F.,Wu, Y. Y.,Zhang, Y. M.,Zhang, Z. J.,Li, H. T.,Liu, N.. 2016

[13]SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors. Chen, Liang,Sun, Daokun,Peng, Junhua,Ren, Jing,You, Frank M.,Wang, Jirui,Luo, Ming-Cheng,You, Frank M.,Peng, Yunliang,Nevo, Eviatar,Beiles, Avigdor,Sun, Dongfa,Peng, Junhua. 2013

[14]Mitochondrial DNA reveals low population differentiation in elongate loach, Leptobotia elongata (Bleeker): implications for conservation. Zhou, Dinggang,Liu, Guangxun,Zhou, Jian. 2012

[15]Genetic Diversity and Structure of Lolium Species Surveyed on Nuclear Simple Sequence Repeat and Cytoplasmic Markers. Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Yuyama, Nana,Cai, Hongwei,Stewart, Alan,Ding, Chenglong,Xu, Nengxiang,Kiyoshi, Takako. 2017

[16]Genetic variation and population structure of the oriental fruit moth Grapholita molesta in Shanxi, a major pome fruits growing region in North China. Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Wu, Yu-Peng,Ma, Rui-Yan. 2016

[17]Genetic diversity and population structure of cultivated bromeliad accessions assessed by SRAP markers. Zhang, Fei,Ge, Yaying,Wang, Weiyong,Shen, Xiaolan,Liu, Xiaojing,Liu, Jianxin,Tian, Danqing,Yu, Xinying. 2012

[18]Genetic diversity and population structure of ginseng in China based on RAPD analysis. Zhao, Yan,Xu, Yong-hua,Zhang, Lian-xue,Wang, Shi-jie,Han, Feng-bo,Li, Ru-sheng,Chen, Xiao-lin,Wang, Shi-jie,Li, Gang. 2016

[19]Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Liu, Jimei,Wang, Li,Geng, Yupeng,Wang, Qingbiao,Luo, Lijun,Zhong, Yang. 2006

[20]Analysis of Genetic Diversity and Population Structure of Maize Landraces from the South Maize Region of China. Liu Zhi-zhai,Guo Rong-hua,Wang Rong-huan,Shi Yun-su,Song Yan-chun,Wang Tian-yu,Li Yu,Liu Zhi-zhai,Cai Yi-lin,Guo Rong-hua,Cao Mo-ju,Zhao Jiu-ran,Wang Feng-ge,Wang Rong-huan. 2010

作者其他论文 更多>>

微信小程序