Genetic structure and eco-geographical differentiation of cultivated Hsien rice (Oryza sativa L. subsp indica) in China revealed by microsatellites

文献类型： 外文期刊

第一作者： Zhang DongLing

作者： Zhang DongLing;Zhang HongLiang;Qi YongWen;Wang MeiXing;Sun JunLi;Li ZiChao;Zhang DongLing;Zhang HongLiang;Qi YongWen;Wang MeiXing;Sun JunLi;Li ZiChao;Ding Li

作者机构：

关键词： population structure;indica;SSR

期刊名称：CHINESE SCIENCE BULLETIN （ 影响因子：1.649； 五年影响因子：1.738 ）

ISSN： 1001-6538

年卷期： 2013 年 58 卷 3 期

页码：

收录情况： SCI

摘要： Indica is not only an important rice subspecies widely planted in Asia and the rest of the world, but it is also the genetic background of the majority of hybrid varieties in China. Studies on genetic structure and genetic diversity in indica germplasm resources are important for the classification and utilization of cultivated rice in China. Using a genetically representative core collection comprising 1482 Chinese indica landraces, we analysed the genetic structure, geographic differentiation and diversity. Model-based structure analysis of varieties within three ecotypes revealed nine eco-geographical types partially accordant with certain ecological zones in China. Differentiation of eco-geographical types was attributed to local ecological adaption and physical isolation. These groups may be useful for developing heterotic groups of indica. To facilitate the identification of different ecotypes and eco-geographical types, we identified characteristic SSR alleles of each ecotype and eco-geographical type and a rapid index of discrimination based on characteristic alleles. The characteristic alleles and rapid discrimination index may guide development of heterotic groups, and selection of hybrid parents.

分类号：

  • 相关文献

[1]Development of microsatellite markers in Cocos nucifera and their application in evaluating the level of genetic diversity of Cocos nucifera. Xiao, Yong,Luo, Yi,Yang, Yaodong,Fan, Haikuo,Xia, Wei,Zhao, Songlin,Qiao, Fei,Fan, Haikuo,Sager, Ross,Mason, Annaliese S.,Mason, Annaliese S.. 2013

[2]Genetic diversity and population structure of 288 potato (&ITSolanum tuberosum&IT L.) germplasms revealed by SSR and AFLP markers. Wang, Jian,Liu Qing-chang,Wang, Jian,He Miao-miao,Hou, Lu,Wang Ruo-yu. 2017

[3]Identification of Resistance to Wet Bubble Disease and Genetic Diversity in Wild and Cultivated Strains of Agaricus bisporus. Fu, Yongping,Wang, Xinxin,Li, Dan,Liu, Yuan,Song, Bing,Zhang, Chunlan,Wang, Qi,Li, Yu,Chen, Meiyuan,Zhang, Zhiwu. 2016

[4]Characterization and utilization of microsatellites in the Coffea canephora genome to assess genetic association between wild species in Kenya and cultivated coffee. Ogutu, Collins,Fang, Ting,Wang, Lu,Ma, Baiquan,Deng, Xianbao,Owiti, Albert,Han, Yuepeng,Ogutu, Collins,Owiti, Albert,Han, Yuepeng,Yan, Lin,Huang, Lifang,Wang, Xiaoyang,Ogutu, Collins,Fang, Ting,Ma, Baiquan,Owiti, Albert,Nyende, Aggrey. 2016

[5]Differentiation of a Miniature Inverted Transposable Element (MITE) system in Asian rice cultivars and its inference for a diphyletic origin of two subspecies of Asian cultivated rice. Hu, H,Mu, J,Zhang, HJ,Tao, YZ,Han, B. 2006

[6]Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars. Yuan, Yang,Yuan, Yang,Zeng, Shuiyun,Gu, Longjiang,Si, Weina,Zhang, Xiaohui,Tian, Dacheng,Yang, Sihai,Wang, Long,Zhang, Qijun. 2017

[7]The Comparison in Tissue Culture Ability of Mature Embryo in Different Cultivars of Rice. Yan Li-na,Li Xia,Wu Dan,Yan Li-na. 2010

[8]Improvement of combining ability for restorer lines with the identified SSR markers in hybrid rice breeding. Liu, XC,Chen, SG,Chen, JS,Ishiki, KS,Wang, WX,Yu, LQ.

[9]Different Aluminum Tolerance among Indica, Japonica and Hybrid Rice Varieties. Shu Chang,Wu Jing-hao,Shi Gao-ling,Lou Lai-qing,Deng Jun-xia,Cai Qing-sheng,Wan Jian-lin. 2015

[10]Aluminium tolerance in rice is antagonistic with nitrate preference and synergistic with ammonium preference. Zhao, Xue Qiang,Shen, Ren Fang,Guo, Shi Wei,Shinmachi, Fumie,Sunairi, Michio,Noguchi, Akira,Hasegawa, Isao.

[11]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

[12]Analysis of genetic diversity and population structure in a tomato (Solanum lycopersicum L.) germplasm collection based on single nucleotide polymorphism markers. Wang, T.,Wang, T.,Zou, Q. D.,Qi, S. Y.,Wang, X. F.,Wu, Y. Y.,Zhang, Y. M.,Zhang, Z. J.,Li, H. T.,Liu, N.. 2016

[13]SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors. Chen, Liang,Sun, Daokun,Peng, Junhua,Ren, Jing,You, Frank M.,Wang, Jirui,Luo, Ming-Cheng,You, Frank M.,Peng, Yunliang,Nevo, Eviatar,Beiles, Avigdor,Sun, Dongfa,Peng, Junhua. 2013

[14]Mitochondrial DNA reveals low population differentiation in elongate loach, Leptobotia elongata (Bleeker): implications for conservation. Zhou, Dinggang,Liu, Guangxun,Zhou, Jian. 2012

[15]Genetic Diversity and Structure of Lolium Species Surveyed on Nuclear Simple Sequence Repeat and Cytoplasmic Markers. Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Yuyama, Nana,Cai, Hongwei,Stewart, Alan,Ding, Chenglong,Xu, Nengxiang,Kiyoshi, Takako. 2017

[16]Genetic variation and population structure of the oriental fruit moth Grapholita molesta in Shanxi, a major pome fruits growing region in North China. Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Wu, Yu-Peng,Ma, Rui-Yan. 2016

[17]Genetic diversity and population structure of cultivated bromeliad accessions assessed by SRAP markers. Zhang, Fei,Ge, Yaying,Wang, Weiyong,Shen, Xiaolan,Liu, Xiaojing,Liu, Jianxin,Tian, Danqing,Yu, Xinying. 2012

[18]Genetic diversity and population structure of ginseng in China based on RAPD analysis. Zhao, Yan,Xu, Yong-hua,Zhang, Lian-xue,Wang, Shi-jie,Han, Feng-bo,Li, Ru-sheng,Chen, Xiao-lin,Wang, Shi-jie,Li, Gang. 2016

[19]Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Liu, Jimei,Wang, Li,Geng, Yupeng,Wang, Qingbiao,Luo, Lijun,Zhong, Yang. 2006

[20]Analysis of Genetic Diversity and Population Structure of Maize Landraces from the South Maize Region of China. Liu Zhi-zhai,Guo Rong-hua,Wang Rong-huan,Shi Yun-su,Song Yan-chun,Wang Tian-yu,Li Yu,Liu Zhi-zhai,Cai Yi-lin,Guo Rong-hua,Cao Mo-ju,Zhao Jiu-ran,Wang Feng-ge,Wang Rong-huan. 2010

作者其他论文 更多>>

微信小程序