A DNA barcode for Piroplasmea

文献类型： 外文期刊

第一作者： Gou, Huitian

作者： Gou, Huitian;Guan, Guiquan;Liu, Aihong;Ma, Miling;Xu, Zongke;Liu, Zhijie;Ren, Qiaoyun;Li, Youquan;Yang, Jifei;Chen, Ze;Yin, Hong;Luo, Jianxun

作者机构：

关键词： Piroplasma;DNA barcoding;Identification efficiency;ITS2

期刊名称：ACTA TROPICA （ 影响因子：3.112； 五年影响因子：3.002 ）

ISSN： 0001-706X

年卷期： 2012 年 124 卷 1 期

页码：

收录情况： SCI

摘要： Due to the difficulty in morphological identification the development of reliable molecular tools for species distinction is a priority for piroplasma. Previous studies based on 18S rRNA and other gene sequences provided a backbone for the phylogeny of piroplasma. However, it is difficult to discriminate species in a comprehensive sample. Here, the abilities of eight DNA regions including 18S rRNA, 285 rRNA, internal transcribed spacer (ITS) regions and COI genes, have been compared as candidates of DNA barcodes for piroplasma. In total, 484 sequences of piroplasma were collected from this study and GenBank. The eight proposed DNA regions were evaluated according to the criterion of Consortium for the Barcode of Life (CBOL). From this evaluation. ITS2 had 100% PCR amplification efficiency, an ideal sequence length, the largest gap between the intra- and inter-specific divergence, 98% identification efficiency at the genus level, and 92% at the species level. Thus, we propose that ITS2 is the most ideal DNA barcode based on the current database for piroplasma. (C) 2012 Elsevier B.V. All rights reserved.

分类号：

  • 相关文献

[1]Structural characterization and applications of ITS2 from rice leaffolders Cnaphalocrocis medinalis and Marasmia patnalis (Lepidoptera: Pyralidae). Yang, Yajun,Wu, Zhihong,Xu, Hongxing,Zheng, Xusong,Lu, Zhongxian. 2017

[2]Species and hybrids in the genus Diaphanosoma Fischer, 1850 (Crustacea: Branchiopoda: Cladocera). Liu, Ping,Xu, Lei,Xu, Shao-Lin,Chen, Hua,Cheng, Dan,Dumont, Henri J.,Han, Bo-Ping,Xu, Lei,Dumont, Henri J.,Martinez, Alejandro,Fontaneto, Diego. 2018

[3]Additional data for a new Theileria sp from China based on the sequences of ribosomal RNA internal transcribed spacers. Liu, Junlong,Guan, Guiquan,Liu, Zhijie,Liu, Aihong,Ma, Miling,Bai, Qi,Yin, Hong,Luo, Jianxun. 2013

[4]Phylogenetic relationships between Dicrocoelium chinensis populations in Japan and China based on mitochondrial nad1 gene sequences. Hayashi, Kei,Ohari, Yuma,Ohtori, Maiko,Mohanta, Uday Kumar,Itagaki, Tadashi,Hayashi, Kei,Ohari, Yuma,Mohanta, Uday Kumar,Itagaki, Tadashi,Tang, WenQiang,Matsuo, Kayoko,Matsuo, Kayoko,Sato, Hiroshi.

[5]Host sex-specific parasites in a functionally dioecious fig: a preference way of adaptation to their hosts. Wang, Qi,Wang, Ning-xin,Huang, Da-Wei,Wang, Qi,Jiang, Zi-Feng,Niu, Li-ming,Li, Zi,Huang, Da-Wei. 2013

[6]Advances in the study of helminth mitochondrial genomes and their associated applications. Jia WanZhong,Yan HongBin,Ni XingWei,Lou ZhongZi,Li HongMin,Cao Ping,Cai XuePeng. 2012

[7]New Genetic Evidence from Three Keel-Backed Liza Species Based on DNA Barcoding Confirms Morphology-Based Identification. Liu, Lu,Song, Na,Panhwar, Sher Khan,Gao, Tianxiang,Han, Zhiqiang,Li, Chunhou,Sun, Dianrong. 2017

[8]Genetic identification of two species of Pleuronichthys by DNA barcoding. Zhang Hui,Gao Tianxiang,Zhang Yan,Li Pengfei,Xu Hanxiang. 2011

[9]Genetic diversity and relationship of Mauremys mutica and M-annamensis assessed by DNA barcoding sequences. Zhao, Jian,Li, Wei,Wen, Ping,Zhang, Dandan,Zhu, Xinping,Zhao, Jian,Wen, Ping. 2016

[10]High universality of matK primers for barcoding gymnosperms. Li, Yan,Gao, Lian-Ming,Poudel, Ram C.,Li, De-Zhu,Li, Yan,Poudel, Ram C.,Li, De-Zhu,Poudel, Ram C.,Forrest, Alan. 2011

[11]Morphological characteristics and DNA barcoding of Pampus echinogaster (Basilewsky, 1855). Li, Yuan,Lin, Longshan,Zhang, Yan,Gao, Tianxiang,Han, Zhiqiang,Zhang, Xiumei. 2017

[12]Molecular identification of the genus Thryssa based on DNA barcoding. Ma, C. -Y.,Ma, H. -Y.,Ni, Y.,Wang, W.,Ma, L. -B.. 2015

[13]DNA barcoding of East Asian Amentotaxus (Taxaceae): Potential new species and implications for conservation. Gao, Lian-Ming,Yan, Li-Jun,Li, De-Zhu,Li, Yan,Loc Ke Phan,Yan, Li-Jun,Li, De-Zhu,Yan, Li-Jun,Li, De-Zhu,Thomas, Philip,Moller, Michael,Long Ke Phan. 2017

[14]Review of three black fungus gnat species (Diptera: Sciaridae) from greenhouses in China Three greenhouse sciarids from China. Ye, Lan,Leng, Ruixin,Huang, Junhao,Wu, Hong,Qu, Cheng. 2017

[15]Existence of species complex largely reduced barcoding success for invasive species of Tephritidae: a case study in Bactrocera spp.. Jiang, F.,Li, Z. H.,Jin, Q.,Zhang, A. B.,Liang, L..

[16]Identification of Pythium spp. from the rhizosphere of soybeans in Ontario, Canada. Marchand, Genevieve,Chen, Yuanhong,Berhane, Nahom A.,Levesque, C. Andre,Xue, Allen G.,Wei, Lai. 2014

[17]DNA barcoding reveals mislabeling of imported fish products in Nansha new port of Guangzhou, Guangdong province, China. Yan, Shuai,Lai, Guiyan,Li, Li,Xiao, Hao,Zhao, Ming,Wang, Ming,Wang, Ming.

[18]Estimating sample sizes for DNA barcoding. Zhang, A. B.,He, L. J.,Crozier, R. H.,Muster, C.,Zhu, C. -D..

[19]Molecular systematics of the fishfly genus Anachauliodes Kimmins, 1954 (Megaloptera: Corydalidae: Chauliodinae). Liu, Xingyue,Yang, Ding,Hayashi, Fumio,Wang, Mengqing.

[20]DNA barcoding and evaluation of genetic diversity in Cyprinidae fish in the midstream of the Yangtze River. Shen, Yanjun,Gan, Xiaoni,Shen, Yanjun,Guan, Lihong,Wang, Dengqiang. 2016

作者其他论文 更多>>
  • Metagenomic Investigation of Pathogenic RNA Viruses Causing Diarrhea in Sika Deer Fawns

    作者：Wang, Weiyang;Wang, Qilin;Cao, Runlai;Li, Yacong;Liu, Ziyu;Xue, Zhuqing;Wang, Xiaoxu;Liu, Zhijie

    关键词：sika deer; viral metagenomics; whole-genome sequencing; rotavirus

  • Epidemiology, molecular diversity and zoonotic implications of Echinococcus granulosus sensu stricto (G1) in cattle across Nigeria: Evidence of broader transmission dynamics

    作者：Amuda, Tharheer Oluwashola;Li, Li;Wang, Li-Qun;Dai, Guo-Dong;Chen, Wei-Gang;Wu, Yao-Dong;Wu, Ke-Ke;Wu, Yixuan;Yin, Hong;Jia, Wan-Zhong;Fu, Bao-Quan;Luo, Xue-Nong;Yan, Hong-Bin;Amuda, Tharheer Oluwashola;Li, Li;Wang, Li-Qun;Dai, Guo-Dong;Chen, Wei-Gang;Wu, Yao-Dong;Wu, Ke-Ke;Wu, Yixuan;Yin, Hong;Jia, Wan-Zhong;Fu, Bao-Quan;Luo, Xue-Nong;Yan, Hong-Bin;Morenikeji, Olajumoke Abimbola;Odaibo, Georgina Nijideka;Onoja, Bernard Anyebe;Akanbi, Ibikunle Mark;Yin, Hong;Jia, Wan-Zhong;Fu, Bao-Quan;Luo, Xue-Nong

    关键词：Echinococcus granulosus sensu lato; Cystic echinococcosis; Nigeria; Genetic diversity; Molecular epidemiology; One health

  • High-phytosterol rapeseed oil prevents atherosclerosis by reducing intestinal barrier dysfunction and cholesterol uptake in ApoE / mice

    作者：Xu, Yaxi;Fang, Mengxue;Yu, Li;Ma, Fei;Zhang, Liangxiao;Li, Peiwu;Xu, Yaxi;Fang, Mengxue;Yu, Li;Ma, Fei;Zhang, Liangxiao;Li, Peiwu;Xu, Yaxi;Fang, Mengxue;Yu, Li;Ma, Fei;Zhang, Liangxiao;Li, Peiwu;Xu, Yaxi;Fang, Mengxue;Ma, Fei;Zhang, Liangxiao;Li, Peiwu;Chen, Ze;Jin, Zhili;Zhang, Tong;Lu, Zhibing;Wang, Hairong;Zhang, Liangxiao;Li, Peiwu;Chen, Ze;Jin, Zhili;Zhang, Tong;Lu, Zhibing;Wang, Hairong;Zhang, Liangxiao;Zhang, Liangxiao;Lu, Zhibing;Wang, Hairong;Li, Peiwu

    关键词：High-phytosterol rapeseed oil; Intestinal barrier; Atherosclerosis; Cholesterol uptake

  • Octacosanol preserves postharvest apple quality by delaying senescence through coordinated regulation of cuticular wax biosynthesis and antioxidant defense mechanisms

    作者：Wei, Mengmeng;Sun, Quan;Du, Lianda;Wang, Wenyan;Qiao, Mingfei;Nie, Zhaopeng;Chu, Tiange;Chen, Ze;Bai, Xinran;Hu, Dagang;Wei, Mengmeng;Sun, Quan;Du, Lianda;Wang, Wenyan;Qiao, Mingfei;Nie, Zhaopeng;Chu, Tiange;Chen, Ze;Bai, Xinran;Hu, Dagang;Wei, Mengmeng;Sun, Quan;Du, Lianda;Wang, Wenyan;Qiao, Mingfei;Nie, Zhaopeng;Chu, Tiange;Chen, Ze;Bai, Xinran;Hu, Dagang;Wan, Aoran

    关键词：Fruit softening; preservative; oxidation inhibitor; cellulose; transcriptome

  • A new intermediate host of Echinococcus shiquicus in Qinghai-Tibet Plateau, China

    作者：Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Hou, Xue-Yi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Guo, Min-Kuan;Li, Wen-Dong;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Li, Wen-Dong;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Chen, Wei-Gang;Li, Li;Dai, Guo-Dong;Wu, Yao-Dong;Amuda, Tharheer Oluwashola;Tian, Xue-Qi;Zhang, Nian-Zhang;Tian, Wen-Jun;Zhang, Lin-Sheng;Li, Le;Fu, Bao-Quan;Yin, Hong;Yan, Hong-Bin;Jia, Wan-Zhong;Shumuye, Nigus Abebe;Gao, Sheng-Zhi;Hou, Xue-Yi;Zhonggecao, Tao;Zhaxilamao, Bao-Quan;Gazangzhuoma, Hong;Doukao, Hong-Bin;Zhang, Fu-Heng;Guo, Min-Kuan;Li, Wen-Dong;Yang, Tao;Fu, Bao-Quan;Yin, Hong;Jia, Wan-Zhong

    关键词：Echinococcus shiquicus; Plateau zokor; Intermediate host; Qinghai-Tibet Plateau; Genetic diversity

  • Diacetyl delays the postharvest quality degradation of apple fruit

    作者：Wang, Ao-Ran;Wang, Wen-Yan;Li, Xiao-Rui;Hu, Da-Gang;Liu, Ya-Ting;Zhang, Song;Chu, Tian-Ge;Chen, Ze;Bai, Xin-Ran;Wang, Ao-Ran

    关键词：Postharvest storage; Ethylene; Taste; Firmness; ROS

  • Epidemiology and Molecular Detection of Tick-Borne Rickettsiae in Hyalomma and Rhipicephalus Ticks Infesting Dogs and Sheep in Pakistan

    作者：Zeb, Jehan;Zeb, Jehan;Zeb, Jehan;Senbill, Haytham;Obaid, Muhammad Kashif;Ren, Qiaoyun;Said, Mourad Ben;Said, Mourad Ben;Aziz, Muhammad Umair;Sparagano, Olivier Andre;Khan, Adil;Alajmi, Reem;Cossio-Bayugar, Raquel;Dzul-Rosado, Karla

    关键词：co-infection; Hyalomma; prevalence; Rhipicephalus; rickettsia; tick-borne pathogens

微信小程序