The impact of positive selection and mutation in prevalence of representative O/Mya-98 foot and mouth disease strains during 2009-2010

文献类型： 外文期刊

第一作者： Kuang, Wendong

作者： Kuang, Wendong;Bai, Xingwen;Qi, Guocai;Hao, Xiaofang;Li, Pinghua;Lu, Zengjun;Bao, Huifang;Sun, Pu;Wu, Lei;Liu, Zaixin

作者机构：

关键词： Foot-and-Mouth disease (FMDV);Mya-98;positive selection;mutation;recombination

期刊名称：AFRICAN JOURNAL OF MICROBIOLOGY RESEARCH （ 影响因子：0.539； 五年影响因子：0.564 ）

ISSN： 1996-0808

年卷期： 2012 年 6 卷 14 期

页码：

收录情况： SCI

摘要： In this study, we investigated the impact of adaptive positive selection on each protein in Open Reading Frame (ORF) (except for 3D(pro)) of serotype O Foot-and-Mouth disease (FMDV). The majority of residues under positive selection were located in antigenic sites or close to heparin interacting regions. There were five identical positions between positive selection sites and substitution sites occurred in three FMDV O/Mya-98 strains (O/JX/CHA/2010, O/VN/LC169/2009 and O/HKN/20/2010) prevalent in Southeast Asia during 2009-2010. In addition, no significant recombination signal was detected in ORF of the Eurasian (Asia1, A, C, and O) serotypes including the three strains above, the result indicated no recombination events occurred in the three strains. We inferred selection and amino acid mutation contributed greatly to the prevalence of the three strains during 2009-2010.

分类号：

  • 相关文献

[1]Evolution and molecular epidemiology of foot-and-mouth disease virus in China. Bai XingWen,Li PingHua,Bao HuiFang,Liu ZaiXin,Li Dong,Lu ZengJun,Cao YiMei,Shang YouJun,Shao JunJun,Chang HuiYun,Luo JianXun,Liu XiangTao. 2011

[2]Emergence of novel nephropathogenic infectious bronchitis viruses currently circulating in Chinese chicken flocks. Xu, Qianqian,Han, Zongxi,Wang, Qiuling,Zhang, Tingting,Gao, Mengying,Zhao, Yan,Shao, Yuhao,Li, Huixin,Kong, Xiangang,Liu, Shengwang.

[3]Enhanced thermostability of methyl parathion hydrolase from Ochrobactrum sp. M231 by rational engineering of a glycine to proline mutation. Tian, Jian,Wang, Ping,Gao, Shan,Chu, Xiaoyu,Wu, Ningfeng,Fan, Yunliu.

[4]Generation and characterization of low phytic acid germplasm in rice (Oryza sativa L.). Liu, Qing-Long,Xu, Xiu-Hong,Ren, Xue-Liang,Fu, Hao-Wei,Wu, Dian-Xing,Shu, Qing-Yao.

[5]Selective modes determine evolutionary rates, gene compactness and expression patterns in Brassica. Liu, Jing,Du, Jianchang,Zhang, Jiefu,Du, Jianchang,Liu, Shengyi,Du, Jianchang. 2017

[6]Mannose selection system used for cucumber transformation. He, Zhengquan,Duan, ZhenZhen,Liang, Wei,Chen, Faju,Yao, Wei,Liang, Hongwei,Yue, Chaoyin,Sun, Zongxiu,Chen, Fan,Dai, Jianwu. 2006

[7]Gene duplication and an accelerated evolutionary rate in 11S globulin genes are associated with higher protein synthesis in dicots as compared to monocots. Li, Chun,Li, Meng,Zhang, Yuan-Ming,Li, Chun,Dunwell, Jim M.. 2012

[8]De novo assembly and characterization of the Hucho taimen transcriptome. Tong, Guang-Xiang,Xu, Wei,Zhang, Yong-Quan,Zhang, Qing-Yu,Yin, Jia-Sheng,Kuang, You-Yi. 2018

[9]Evidence for positive selection in Ser/Thr protein kinases (STKs) genes of Trichodesmium erythraeum. Liang, Chengwei,Zhang, Xiaowen. 2009

[10]An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Hofinger, Bernhard J.,Bass, Chris G.,Baldwin, Thomas,Hammond-Kosack, Kim E.,Kanyuka, Kostya,Russell, Joanne R.,Hedley, Peter E.,Macaulay, Malcolm,Waugh, Robbie,Dos Reis, Mario,Li, Yidan.

[11]Molecular diversity and evolution of defensins in the manila clam Ruditapes philippinarum. Wang, Qing,Yang, Dinglong,Yu, Qian,Li, Fei,Cong, Ming,Ji, Chenglong,Wu, Huifeng,Zhao, Jianmin,Zhang, Linbao,Yang, Dinglong,Yu, Qian.

[12]Transcriptome analysis revealed positive selection of immune-related genes in tilapia. Xiao, Jun,Zhong, Huan,Luo, Yongju,Gan, Xi,Zhou, Yi,Liu, Zhen,Zhou, Yi,Yu, Fan.

[13]Independent Losses of Function in a Polyphenol Oxidase in Rice: Differentiation in Grain Discoloration between Subspecies and the Role of Positive Selection under Domestication. Tang, Tian,Wu, Chung-I,Shi, Suhua,Yu, Yanchun,Wang, Yonghong,Li, Jiayang,Yu, Yanchun,Wang, Yonghong,Li, Jiayang,Qian, Qian,Yan, Meixian,Zeng, Dali,Han, Bin,Han, Bin,Wu, Chung-I,Wu, Chung-I.

[14]Transcriptome Sequencing of Lima Bean (Phaseolus lunatus) to Identify Putative Positive Selection in Phaseolus and Legumes. Cao, Depan,Liu, Yang,Yang, Ting,Wang, Guirong. 2015

[15]Population size may shape the accumulation of functional mutations following domestication. Chen, Jianhai,Ni, Pan,Li, Xinyun,Zhao, Shuhong,Chen, Jianhai,Ni, Pan,Li, Xinyun,Zhao, Shuhong,Han, Jianlin,Han, Jianlin,Jakovlic, Ivan,Zhang, Chengjun. 2018

[16]A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds. Yang, Songbai,Li, Kui,Tang, Zhonglin,Yang, Songbai,Li, Xiuling,Fan, Bin,Yang, Songbai,Li, Xiuling,Fan, Bin. 2014

[17]Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton. Li, Yanpeng,Yang, Tiegang,Dai, Dandan,Hu, Ying,Guo, Xiaoyang,Guo, Hongxia,Li, Yanpeng,Yang, Tiegang,Dai, Dandan,Hu, Ying,Guo, Xiaoyang,Guo, Hongxia. 2017

[18]Genome-wide identification and evolutionary analysis of positively selected miRNA genes in domesticated rice. Liu, Qingpo,Wang, Hong,Hu, Haichao,Liu, Qingpo,Wang, Hong,Hu, Haichao,Zhang, Hengmu.

[19]Phosphomannose-isomerase (pmi) gene as a selectable marker for rice transformation via Agrobacterium. He, ZQ,Fu, YP,Si, HM,Hu, GC,Zhang, SH,Yu, YH,Sun, ZX.

[20]Rapid diversification of five Oryza AA genomes associated with rice adaptation. Zhang, Qun-Jie,Zhu, Ting,Xia, En-Hua,Shi, Chao,Liu, Yun-Long,Zhang, Yun,Liu, Yuan,Jiang, Wen-Kai,Zhao, You-Jie,Mao, Shu-Yan,Zhang, Li-Ping,Huang, Hui,Jiao, Jun-Ying,Xu, Ping-Zhen,Yao, Qiu-Yang,Yang, Li-Li,Gao, Ju,Gao, Li-Zhi,Zhang, Qun-Jie,Zhu, Ting,Xia, En-Hua,Shi, Chao,Liu, Yuan,Yao, Qiu-Yang,Zeng, Fan-Chun,Gao, Ju,Tao, Da-Yun,Wang, Yue-Ju,Bennetzen, Jeffrey L..

作者其他论文 更多>>

微信小程序