Transcriptome analysis reveals salt-stress-regulated biological processes and key pathways in roots of cotton (Gossypium hirsutum L.)

文献类型： 外文期刊

第一作者： Yao, Dongxia

作者： Yao, Dongxia;Wang, Chunchao;Zhang, Zhenghai;Wei, Qiang;Yan, Hong;Su, Zhen;Zhang, Xueyan;Zhao, Xinhua;Liu, Chuanliang;Zhang, Chaojun;Wang, Qianhua;Li, Fuguang

作者机构：

关键词： TM-1 upland cotton;Salt stress;Root;Transcriptome map;Signal transduction pathways;Hormone

期刊名称：GENOMICS （ 影响因子：5.736； 五年影响因子：4.939 ）

ISSN： 0888-7543

年卷期： 2011 年 98 卷 1 期

页码：

收录情况： SCI

摘要： High salinity is one of the main factors limiting cotton growth and productivity. The genes that regulate salt stress in TM-1 upland cotton were monitored using microarray and real-time PCR (RT-PCR) with samples taken from roots. Microarray analysis showed that 1503 probe sets were up-regulated and 1490 probe sets were down-regulated in plants exposed for 3 h to 100 mM NaCl, and RT-PCR analysis validated 42 relevant/related genes. The distribution of enriched gene ontology terms showed such important processes as the response to water stress and pathways of hormone metabolism and signal transduction were induced by the NaCl treatment. Some key regulatory gene families involved in abiotic and biotic sources of stress such as WRKY, ERF, and JAZ were differentially expressed. Our transcriptome analysis might provide some useful insights into salt-mediated signal transduction pathways in cotton and offer a number of candidate genes as potential markers of tolerance to salt stress. (C) 2011 Elsevier Inc. All rights reserved.

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