SSR data mined from expressed sequence tags of phytoparasitic nematodes

文献类型： 外文期刊

第一作者： Huang, Q. X.

作者： Huang, Q. X.;Cheng, X. Y.;Xu, R. M.;Xie, B. Y.

作者机构：

关键词： microsatellites;expressed sequence tags;plant-parasitic nematodes

期刊名称：HELMINTHOLOGIA （ 影响因子：1.184； 五年影响因子：0.96 ）

ISSN： 0440-6605

年卷期： 2010 年 47 卷 1 期

页码：

收录情况： SCI

摘要： SSR markers have become the most popular resource for studying population genetic variation in eukaryotes. However, few studies with SSR markers have been carried out with phytoparasitic nematodes. In this study a primary survey on EST-SSRs was made utilizing bioinformatics methods to derive SSRs from expressed sequence tags (ESTs) of 16 species of PPN, which belong to 7 genera and 5 families. The results showed that trinucleotide repeats were the most abundant SSRs in coding ESTs, while tetranucleotide SSRs were predominant in non-coding ESTs and genome sequences. AG/CT, AAC/GTT and (AAAN)(n) motifs were predominant, and CG/GC, ACT/AGT motifs were scanty in the ESTs of most genera and species. SSRs were more abundant in non-coding ESTs than in coding ESTs. The distribution frequencies of SSR motifs in coding ESTs, non-coding ESTs and genomes are different. Our results will provide useful information for screening SSRs from each genus and species for further genetic study of phytoparastic nematodes.

分类号：

  • 相关文献

[1]DEVELOPMENT AND CHARACTERIZATION OF 41 NOVEL EST-SSR MARKERS FOR PISUM SATIVUM (LEGUMINOSAE). Xu, Sheng-Chun,Gong, Ya-Ming,Hu, Qi-Zan,Zhang, Gu-Wen,Mao, Wei-Hua,Fu, Wan,Xian, Qiang-Qiang,Fu, Wan,Xian, Qiang-Qiang. 2012

[2]Influence of cellulase gene knockdown by dsRNA interference on the development and reproduction of the pine wood nematode, Bursaphelenchus xylophilus. Dai, Su-Ming,Xiao, Luo,Xie, Bing-Yan,Cheng, Xin-Yue. 2010

[3]Identification of Expressed Resistance Gene Analogs from Peanut (Arachis hypogaea L.) Expressed Sequence Tags. Liu, Zhanji,Feng, Suping,Pandey, Manish K.,Chen, Xiaoping,Culbreath, Albert K.,Liu, Zhanji,Feng, Suping,Pandey, Manish K.,Varshney, Rajeev K.,Chen, Xiaoping,Guo, Baozhu. 2013

[4]Differential gene expression of cotton cultivar CCRI24 during somatic embryogenesis. Xiuming Wu,Fuguang Li#2;,Chaojun Zhang,Chuanliang Liu,Xueyan Zhang.

[5]Immune gene discovery by expressed sequence tag (EST) analysis of hemocytes in the ridgetail white prawn Exopalaemon carinicauda. Duan, Yafei,Liu, Ping,Li, Jitao,Li, Jian,Chen, Ping,Duan, Yafei. 2013

[6]Identification of differentially expressed genes in Mongolian sheep ovaries by suppression subtractive hybridization. He, Xiaolong,Wang, Feng,Tian, Chunying,Rong, Weiheng,Liu, Yongbin,He, Xiaolong,Li, Bei. 2012

[7]Generation and analysis of expressed sequence tags from almond (Prunus dulcis Mill.) pistils. Jiang, YQ,Ma, RC. 2003

[8]Erwinia carotovora ssp. Carotovora infection induced "defense lignin" accumulation and lignin biosynthetic gene expression in chinese cabbage (Brassica rapa L. ssp pekinensis). Zhang, Song-He,Yang, Qing,Ma, Rong-Cai. 2007

[9]Progress in expressed sequence tags (EST) project of plant genome. Luo, M,Jia, JZ. 2001

[10]Analysis of ESTs from a Normalized cDNA Library of the Rhizome Tip of Oryza longistaminata. Zhang, Ting,Zhao, Xiuqin,Fu, Binying,Zhang, Ting,Yang, Daichang,Li, Lijuan,Hu, Fengyi.

[11]Isolation and characterization of induced genes under drought stress at the flowering stage in maize (Zea mays). Li, Hui-Yong,Wang, Tian-Yu,Shi, Yun-Su,Fu, Jun-Jie,Song, Yan-Chun,Wang, Guo-Ying,Li, Yu.

[12]Porcine skeletal muscle differentially expressed gene CMYA1: isolation, characterization, mapping, expression and association analysis with carcass traits. Xu, X. L.,Xu, X. W.,Pan, P. W.,Yu, M.,Liu, B.,Xu, X. L.,Xu, X. W.,Pan, P. W.,Yu, M.,Liu, B.,Li, K.,Jiang, Z. H.,Rothschild, M. F.,Rothschild, M. F..

[13]Analysis of Resistance to Powdery Mildew in Wheat Based on Expressed Sequence Tags (EST) Technique. Luo, M,Kong, XY,Jiang, T,Jia, C,Zhou, RH,Jia, JZ.

[14]Identification of microsatellites in cattle unigenes. Yan, Qiuliang,Lib, Hongbin,Wei, Caihong,Niu, Lili,Li, Shangang,Du, Lixin,Yan, Qiuliang,Zhang, Yinghan,Guan, Shan. 2008

[15]Construction of a full-length cDNA library and preliminary analysis of expressed sequence tags from lymphocytes of half-pipe snowboarding athletes. Zhao, Y. H.,Zhang, Z. B.,Zhao, C. Q.,Zhang, Y.,Wang, Y. F.,Zhu, Z. Q.,Guan, W. J.. 2015

[16]Construction of a Full-Length Enriched cDNA Library and Preliminary Analysis of Expressed Sequence Tags from Bengal Tiger Panthera tigris tigris. Liu, Changqing,Lu, Taofeng,Li, Xiangchen,Ma, Yuehui,Guan, Weijun,Liu, Changqing,Guo, Yu,Liu, Dan,Zhang, Minghai,Ma, Jianzhang. 2013

[17]PRIMARY ANALYSIS OF THE EXPRESSED SEQUENCE TAGS FROM A FULL-LENGTH ENRICHED cDNA LIBRARY OF SIBERIAN TIGER (PANTHERA TIGRIS ALTAICA). Guo, Y.,Liu, C. Q.,Xu, L. S.,Lu, T. F.,Li, X. C.,Ma, Y. H.,Guan, W. J.,Liu, D.,Ma, J. Z.. 2015

[18]Analysis of expressed sequence tags (ESTs) from a normalized cDNA library and isolation of EST simple sequence repeats from the invasive cotton mealybug phenacoccus solenopsis. Lang, Kun-Ling,Shen, Chang-Peng,Wan, Fang-Hao,Chu, Dong,Fu, Hai-Bin,Wan, Fang-Hao. 2015

[19]Development and characterization of novel expressed sequence tag-derived simple sequence repeat markers in Hevea brasiliensis (rubber tree). An, Z. W.,Li, Y. C.,Zhai, Q. L.,Xie, L. L.,An, Z. W.,Huang, H. S.,An, Z. W.,Huang, H. S.,Zhao, Y. H.. 2013

[20]Proteomics-based identification of storage, metabolic, and allergenic proteins in wheat seed from 2-DE gels. Yang, Liming,Luo, Yuming,Zhang, Ruiyue,Ren, Chongmiao,Zhou, Xin,Tian, Dagang. 2011

作者其他论文 更多>>

微信小程序