Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation

文献类型: 外文期刊

第一作者: Zeng, Lin

作者: Zeng, Lin;Liu, He-Qun;Wang, Sheng;Wang, Ming-Shan;Charati, Hadi;Zhang, Ya-Ping;Wu, Dong-Dong;Ji, Chang-Mian;Gou, Xiao;Esmailizadeh, Ali;Zeng, Lin;Charati, Hadi;Adeola, Adeniyi C.;Zhang, Ya-Ping;Wu, Dong-Dong;Wu, Dong-Dong;Frantz, Laurent A. F.;Liu, He-Qun;Tu, Xiao-Long;Adeola, Adeniyi C.;Adedokun, Rahamon Akinyele Moshood;Olaogun, Sunday Charles;Oladipo, Olatunbosun;Sanke, Oscar J.;Godwin, Mangbon F.;Ommeh, Sheila Cecily;Ommeh, Sheila Cecily;Agwanda, Bernard;Lichoti, Jacqueline Kasiiti;Wang, Chang-Fa;Wang, Chang-Fa;Han, Jian-Lin;Ji, Chang-Mian;Wang, Ming-Cheng;Li, Xiao-Long;Zheng, Hong-Kun;Frantz, Laurent A. F.

作者机构:

关键词: Kiang; Donkey; High altitude; Adaptation; Selection

期刊名称:ZOOLOGICAL RESEARCH ( 影响因子:4.56; )

ISSN: 2095-8137

年卷期: 2021 年 42 卷 4 期

页码:

收录情况: SCI

摘要: Over the last several hundred years, donkeys have adapted to high-altitude conditions on the Tibetan Plateau. Interestingly, the kiang, a closely related equid species, also inhabits this region. Previous reports have demonstrated the importance of specific genes and adaptive introgression in divergent lineages for adaptation to hypoxic conditions on the Tibetan Plateau. Here, we assessed whether donkeys and kiangs adapted to the Tibetan Plateau via the same or different biological pathways and whether adaptive introgression has occurred. We assembled a de novo genome from a kiang individual and analyzed the genomes of five kiangs and 93 donkeys (including 24 from the Tibetan Plateau). Our analyses suggested the existence of a strong hard selective sweep at the EPAS1 locus in kiangs. In Tibetan donkeys, however, another gene, i.e., EGLN1, was likely involved in their adaptation to high altitude. In addition, admixture analysis found no evidence for interspecific gene flow between kiangs and Tibetan donkeys. Our findings indicate that despite the short evolutionary time scale since the arrival of donkeys on the Tibetan Plateau, as well as the existence of a closely related species already adapted to hypoxia, Tibetan donkeys did not acquire adaptation via admixture but instead evolved adaptations via a different biological pathway.

分类号:

  • 相关文献

[1]Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation. Zeng, Lin,Liu, He-Qun,Wang, Sheng,Wang, Ming-Shan,Charati, Hadi,Zhang, Ya-Ping,Wu, Dong-Dong,Ji, Chang-Mian,Gou, Xiao,Esmailizadeh, Ali,Zeng, Lin,Charati, Hadi,Adeola, Adeniyi C.,Zhang, Ya-Ping,Wu, Dong-Dong,Wu, Dong-Dong,Frantz, Laurent A. F.,Liu, He-Qun,Tu, Xiao-Long,Adeola, Adeniyi C.,Adedokun, Rahamon Akinyele Moshood,Olaogun, Sunday Charles,Oladipo, Olatunbosun,Sanke, Oscar J.,Godwin, Mangbon F.,Ommeh, Sheila Cecily,Ommeh, Sheila Cecily,Agwanda, Bernard,Lichoti, Jacqueline Kasiiti,Wang, Chang-Fa,Wang, Chang-Fa,Han, Jian-Lin,Ji, Chang-Mian,Wang, Ming-Cheng,Li, Xiao-Long,Zheng, Hong-Kun,Frantz, Laurent A. F.. 2021

作者其他论文 更多>>
  • Green and effective remediation of heavy metals contaminated water using CaCO3 vaterite synthesized through biomineralization

    作者:Jin, Bingbing;Wang, Sheng;Lei, Yuze;Jia, Hui;Dapaah, Malcom Frimpong;Cheng, Liang;Niu, Qijian;Gao, Yan;Jia, Hui;Cheng, Liang

    关键词:Biomineralization; Vaterite; Cadmium; Removal mechanism; Stability

  • Genomic insights into local adaptation and phenotypic diversity of Wenchang chickens

    作者:Gu, Li-Hong;Zheng, Xin-Li;He, Zhong-Chun;Qi, Yan-Tao;Chen, An-Hong;Wu, Ran -Ran;Zhang, Ya-Ping;Wu, Ran -Ran;Zhang, Ya-Ping;Fu, An;Peng, Min-Sheng;Ma, Cheng;Xing, Zeng-Yang;Chen, Yi-Yong;Lu, Li-Zhi;Zhang, Ya-Ping;Wu, Ran -Ran;Zhang, Ya-Ping;Peng, Min-Sheng;Xu, Tie-Shan

    关键词:Wenchang chicken; population structure; feather color; local adaptation; GWAS

  • Effect of osmanthus hydrolat on the aroma quality and volatile components of osmanthus black tea

    作者:Meng, Xin;Wang, Fang;Zeng, Lin;Feng, Zhi-Hui;Yin, Jun-Feng;Xu, Yong-Quan;Meng, Xin;Du, Qizhen;Fu, Chao-Hong;Chen, Zhen-Hua

    关键词:Osmanthus; Hydrolat; Volatile components; osmanthus black tea

  • Dual-trait genomic analysis in highly stratified Arabidopsis thaliana populations using genome-wide association summary statistics

    作者:Feng, Xiao;Li, Ting;Yao, Yue;Li, Jiabei;Charati, Hadi;Shen, Xia;Feng, Xiao;Ning, Zheng;Xu, Weilin;Wan, Qianhui;Shen, Xia;Zan, Yanjun;Xu, Weilin;Wan, Qianhui;Zeng, Dongyu;Liu, Yang;Zeng, Ziyi;Shen, Xia

    关键词:

  • Screening of Miscanthus Genotypes for Sustainable Production of Microcrystalline Cellulose and Cellulose Nanocrystals

    作者:Liu, Weiming;You, Lanqing;Wang, Sheng;Chen, Zhiyong;Iqbal, Yasir;Xue, Shuai;Fu, Tongcheng;Yi, Zili;Li, Meng;Liu, Weiming;You, Lanqing;Wang, Sheng;Chen, Zhiyong;Iqbal, Yasir;Xue, Shuai;Fu, Tongcheng;Yi, Zili;Li, Meng;Liu, Weiming;You, Lanqing;Wang, Sheng;Chen, Zhiyong;Iqbal, Yasir;Xue, Shuai;Fu, Tongcheng;Yi, Zili;Li, Meng;Li, Jie;Si, Buchun

    关键词:Miscanthus spp.; biomass quality traits; microcrystalline cellulose; cellulose nanocrystals; machine learning

  • NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads

    作者:Hu, Jiang;Wang, Zhuo;Sun, Zongyi;Liang, Fan;Li, Jingjing;Wang, Depeng;Hu, Benxia;Ayoola, Adeola Oluwakemi;Wu, Dong-Dong;Wang, Sheng;Sandoval, Jose R.;Cooper, David N.;Hu, Jiang;Ye, Kai;Ruan, Jue;Xiao, Chuan-Le;Wu, Dong-Dong;Wu, Dong-Dong;Wang, Sheng;Wu, Dong-Dong

    关键词:Long reads; Genome assembly; Error-correction; Human genomes; Segmental duplication

  • A compendium of genetic regulatory effects across pig tissues

    作者:Teng, Jinyan;Gao, Yahui;Xu, Zhiting;Lin, Qing;Diao, Shuqi;Pan, Xiangchun;Wei, Chen;Zhang, Zhe;Zhang, Zhe;Gao, Yahui;Li, Cong-jun;Liu, George E.;Gao, Yahui;Gao, Yahui;Yin, Hongwei;Bai, Lijing;Yang, Liu;Yi, Guoqiang;Tang, Zhonglin;Li, Kui;Yin, Hongwei;Bai, Zhonghao;Bai, Zhonghao;Yu, Xiaoshan;Haley, Chris;Navarro, Pau;Tenesa, Albert;Fang, Lingzhao;Liu, Shuli;Zhao, Bingru;Yang, Wenjing;Ding, Xiangdong;Li, Xiujin;Pan, Zhangyuan;Yang, Wenjing;Guan, Dailu;Pan, Zhangyuan;Hou, Yali;Hou, Yali;Keel, Brittney N.;Rohrer, Gary A.;Lindholm-Perry, Amanda K.;Oliver, William T.;Ballester, Maria;Crespo-Piazuelo, Daniel;Quintanilla, Raquel;Rawlik, Konrad;Xia, Charley;Xia, Charley;Yao, Yuelin;Yao, Wenye;Karlskov-Mortensen, Peter;Fredholm, Merete;Amills, Marcel;Clop, Alex;Amills, Marcel;Godia, Marta;Clop, Alex;Giuffra, Elisabetta;Rocha, Dominique;Wang, Sheng;Rocha, Dominique;Dekkers, Jack C. M.;Kramer, Luke;Tuggle, Christopher K.;Corbett, Ryan;Charles, Mathieu;Pausch, Hubert;Hu, Xiaoxiang;Frantz, Laurent;Frantz, Laurent;Luo, Yonglun;Lin, Lin;Luo, Yonglun;Lin, Lin;Luo, Yonglun;Zhang, Zhe;Chen, Zitao;Cui, Leilei;Cui, Leilei;Cui, Leilei;Cui, Leilei;Cui, Leilei;Xiang, Ruidong;Xiang, Ruidong;Shen, Xia;Shen, Xia;Shen, Xia;Li, Pinghua;Huang, Ruihua;Tang, Guoqing;Li, Mingzhou;Zhao, Yunxiang;Jiang, Jicai;Yuan, Xiaolong;Liu, Xiaohong;Zhao, Shuhong;Zhao, Pengju;Zhao, Shuhong;Zhao, Pengju;Zhao, Pengju;Haley, Chris;Tenesa, Albert;Zhang, Qin;Tenesa, Albert

    关键词: