Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

文献类型： 外文期刊

第一作者： Zhaoen Yang;;Qian Gong;;Wenqiang Qin

作者： Zhaoen Yang;Qian Gong;Wenqiang Qin;Qin, Wenqiang;Yang, Zhaoen;Zuoren Yang;Yuan Cheng;Lili Lu;Xiaoyang Ge;Chaojun Zhang;Zhixia Wu;Fuguang Li

作者机构：

关键词： Gossypium hirsutum;WUSCHEL-related homeobox;Segmental duplication;Transcript factor;Embryogenesis

期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）

ISSN： 1471-2229

年卷期： 2017 年 17 卷

页码：

收录情况： SCI

摘要： Background: WUSCHEL-related homeobox (WOX) family members play significant roles in plant growth and development, such as in embryo patterning, stem-cell maintenance, and lateral organ formation. The recently published cotton genome sequences allow us to perform comprehensive genome-wide analysis and characterization of WOX genes in cotton. Results: In this study, we identified 21, 20, and 38 WOX genes in Gossypium arboreum (2n = 26, A(2)), G. raimondii (2n = 26, D-5), and G. hirsutum (2n = 4x = 52, (AD)(t)), respectively. Sequence logos showed that homeobox domains were significantly conserved among the WOX genes in cotton, Arabidopsis, and rice. A total of 168 genes from three typical monocots and six dicots were naturally divided into three clades, which were further classified into nine sub-clades. A good collinearity was observed in the synteny analysis of the orthologs from At and Dt (t represents tetraploid) sub-genomes. Whole genome duplication (WGD) and segmental duplication within At and Dt sub-genomes played significant roles in the expansion of WOX genes, and segmental duplication mainly generated the WUS clade. Copia and Gypsy were the two major types of transposable elements distributed upstream or downstream of WOX genes. Furthermore, through comparison, we found that the exon/intron pattern was highly conserved between Arabidopsis and cotton, and the homeobox domain loci were also conserved between them. In addition, the expression pattern in different tissues indicated that the duplicated genes in cotton might have acquired new functions as a result of sub-functionalization or neo-functionalization. The expression pattern of WOX genes under different stress treatments showed that the different genes were induced by different stresses. Conclusion: In present work, WOX genes, classified into three clades, were identified in the upland cotton genome. Whole genome and segmental duplication were determined to be the two major impetuses for the expansion of gene numbers during the evolution. Moreover, the expression patterns suggested that the duplicated genes might have experienced a functional divergence. Together, these results shed light on the evolution of the WOX gene family, and would be helpful in future research.

分类号：

  • 相关文献

[1]Genome-Wide Study of YABBY Genes in Upland Cotton and Their Expression Patterns under Different Stresses. Zhaoen Yang,Qian Gong,Li, Fuguang,Lingling Wang,Yuying Jin,Jianping Xi,Zhi Li,Wenqiang Qin,Zuoren Yang,Lili Lu,Quanjia Chen,Fuguang Li. 2018

[2]Evolution of plant microRNA gene families. Li, Aili,Mao, Long. 2007

[3]Small RNA profiling and degradome analysis reveal regulation of microRNA in peanut embryogenesis and early pod development. Gao, Chao,Wang, Pengfei,Zhao, Shuzhen,Zhao, Chuanzhi,Xia, Han,Hou, Lei,Zhang, Ye,Li, Changsheng,Wang, Xingjun,Wang, Xingjun,Ju, Zheng. 2017

[4]Plant development from microspore-derived embryos in oilseed rape as affected by chilling, desiccation and cotyledon excision. Zhang, GQ,Zhang, DQ,Tang, GX,He, Y,Zhou, WJ. 2006

[5]High frequency spontaneous production of doubled haploid plants in microspore cultures of Brassica rapa ssp chinensis. Gu, HH,Zhou, WJ,Hagberg, P. 2003

[6]Effects of pH, MES, arabinogalactan-proteins on microspore cultures in white cabbage. Yuan, Su-xia,Su, Yan-bin,Liu, Yu-mei,Fang, Zhi-yuan,Yang, Li-mei,Zhuang, Mu,Zhang, Yang-yong,Sun, Pei-tian.

[7]Improvement of Agrobacterium-mediated transformation efficiency and transgenic plant regeneration of Vitis vinifera L. by optimizing selection regimes and utilizing cryopreserved cell suspensions. Li, P,Hanania, U,Sahar, N,Mawassi, M,Gafny, R,Sela, I,Tanne, E,Perl, A.

[8]Cloning, molecular characterization and expression analysis of heat shock cognate 70 (Hsc70) cDNA from turbot (Scophthalmus maximus). Wang, T. T.,Wang, N.,Liao, X. L.,Meng, L.,Liu, Y.,Chen, S. L.,Wang, T. T..

[9]Cloning, genomic structure and expression analysis of ubc9 in the course of development in the half-smooth tongue sole (Cynoglossus semilaevis). Hu, Qiaomu,Chen, Songlin,Hu, Qiaomu.

[10]Effect of combined cold pretreatment and heat shock on microspore cultures in broccoli. Yuan, S. X.,Liu, Y. M.,Fang, Z. Y.,Yang, L. M.,Zhuang, M.,Zhang, Y. Y.,Sun, P. T..

[11]Hunchback IS REQUIRED FOR ABDOMINAL IDENTITY SUPPRESSION AND GERMBAND GROWTH IN THE PARTHENOGENETIC EMBRYOGENESIS OF THE PEA APHID, Acyrthosiphon pisum. Liu, Changyan,Zeng, Fanrong.

[12]Improvement of isolated microspore culture of barley (Hordeum vulgare L.): the effect of floret co-culture. Lu, Ruiju,Wang, Yifei,Sun, Yuefang,Shan, Lili,Huang, Jianhua,Lu, Ruiju,Wang, Yifei,Sun, Yuefang,Shan, Lili,Huang, Jianhua,Lu, Ruiju,Chen, Peidu.

[13]Studies on Agrobacterium-mediated genetic transformation of embryogenic suspension cultures of sweet potato. Xing, Yu-Jun,Ji, Qin,Luo, Yu-Ming,Xing, Yu-Jun,Yang, Qing,Li, Qiang,Wang, Xin. 2008

[14]Anther culture and plant regeneration of cotton (Gossypium klotzschianum Anderss). Feng, R,Li, XH,Li, FL. 1996

[15]Morphological anatomy, sporogenesis and gametogenesis in flowering process of jasmine (Jasminum sambac Aiton). Deng, Yanming,Jia, Xinping,Liang, Lijian,Sun, Xiaobo,Gu, Chunsun.

[16]Induction and development of microspore-derived embryos in broccoli x white-headed cabbage hybrids microspore culture. Zeng, Aisong,Song, Lixiao,Liu, Huanhuan,Hou, Xilin,Li, Ying,Zeng, Aisong,Yan, Jiyong,Song, Lixiao,Gao, Bing,Zhang, Yunxia,Li, Jianqi.

[17]Embryo induction and plant regeneration of Callerya speciosa (Fabaceae) through anther culture. Huang, Bilan,Xu, Li,Li, Kelie,Fu, Yunlu,Li, Zhiying.

[18]Molecular characterization of the growth hormone in Chinese sturgeon and its expression during embryogenesis and early larval stages. Cao, H.,Gui, J. F.,Cao, H.,Zhou, R. J.,Wei, Q. W.,Li, C. J..

[19]Molecular cloning, characterization and expression analysis of a clip-domain serine protease from pearl oyster Pinctada fucata. Xu, Xinping,Xu, Xinping,Zhang, Dianchang,Jiang, Shigui,Ma, Jianjun,Jiang, Jingjing,Pan, Dequan,Zhang, Dianchang,Jiang, Jingjing.

[20]Screening of genes induced by salt stress from Alfalfa. Jin, Houcong,Yang, Qingchuan,Chao, Yuehui,Kang, Junmei,Li, Yan,Sun, Yan,Jin, Houcong,Jin, Hong,Margaret, Gruber.

作者其他论文 更多>>

微信小程序