Genome-Wide Identification and Expression Analysis of the Biotin Carboxyl Carrier Subunits of Heteromeric Acetyl-CoA Carboxylase in Gossypium

文献类型： 外文期刊

第一作者： Cui, Yupeng

作者： Cui, Yupeng;Zhao, Yanpeng;Liu, Zhengjie;Ijaz, Babar;Hua, Jinping;Wang, Yumei;Huang, Yi

作者机构：

关键词： biotin carboxyl carrier subunit (BCCP);gene family;expression profile;Gossypium;phylogenetic analysis

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.753； 五年影响因子：6.612 ）

ISSN： 1664-462X

年卷期： 2017 年 8 卷

页码：

收录情况： SCI

摘要： Acetyl-CoA carboxylase is an important enzyme, which catalyzes acetyl-CoA's carboxylation to produce malonyl-CoA and to serve as a committed step for de novo fatty acid biosynthesis in plastids. In this study, 24 putative cotton BCCP genes were identified based on the lately published genome data in Gossypium. Among them, 4, 4, 8, and 8 BCCP homologs were identified in Gossypium raimondii, G. arboreum, G. hirsutum, and G. barbadense, respectively. These genes were divided into two classes based on a phylogenetic analysis. In each class, these homologs were relatively conserved in gene structure and motifs. The chromosomal distribution pattern revealed that all the BCCP genes were distributed equally on corresponding chromosomes or scaffold in the four cotton species. Segmental duplication was a predominant duplication event in both of G. hirsutum and G. barbadense. The analysis of the expression profile showed that 8 GhBCCP genes expressed in all the tested tissues with changed expression levels, and GhBCCP genes belonging to class II were predominantly expressed in developing ovules. Meanwhile, the expression analysis for the 16 cotton BCCP genes from G. raimondii, G. arboreum and G. hirsutum showed that they were induced or suppressed by cold or salt stress, and their expression patterns varied among different tissues. These findings will help to determine the functional and evolutionary characteristics of the BCCP genes in Gossypium species.

分类号：

  • 相关文献

[1]Genome-wide characterization and comparative analysis of the MLO gene family in cotton. Xiaoyan Wang,Qifeng Ma,Lingling Dou,Zhen Liu,Renhai Peng,Shuxun Yu. 2016

[2]SnRK2 Homologs in Gossypium and GhSnRK2.6 Improved Salt Tolerance in Transgenic Upland Cotton and Arabidopsis. Su, Ying,Zhen, Junbo,Zhang, Xi,Chen, Zhiwen,Li, Le,Hua, Jinping,Wang, Yumei,Zhen, Junbo,Huang, Yi.

[3]Multiple tandem duplication of the phenylalanine ammonia-lyase genes in Cucumis sativus L.. Shang, Qing-Mao,Li, Liang,Dong, Chun-Juan. 2012

[4]Genome-wide analysis of the CaHsp20 gene family in pepper: comprehensive sequence and expression profile analysis under heat stress. Guo, Meng,Liu, Jin-Hong,Lu, Jin-Ping,Zhai, Yu-Fei,Wang, Hu,Gong, Zhen-Hui,Lu, Ming-Hui,Wang, Shu-Bin. 2015

[5]Genome-wide characterization of phenylalanine ammonia-lyase gene family in watermelon (Citrullus lanatus). Dong, Chun-Juan,Shang, Qing-Mao.

[6]Identification and expression analysis of group III WRKY transcription factors in cotton. DOU Ling-ling,GUO Ya-ning,Ondati Evans,PANG Chao-you,WEI Heng-ling,SONG Mei-zhen,FAN Shu-li,YU Shu-xun. 2016

[7]Molecular evolution of the plastid genome during diversification of the cotton genus. Zhiwen Chen,Hua, Jinping,Wendel, Jonathan F.,Corrinne E. Grover,Pengbo Li,Yumei Wang,Hushuai Nie,Yanpeng Zhao,Meiyan Wang,Fang Liu,Zhongli Zhou,Xingxing Wang,Xiaoyan Cai,Kunbo Wang,Jonathan F. Wendel,Jinping Hua.

[8]Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.). Li, Ai-Li,Zhu, Yuan-Fang,Tan, Xiao-Mei,Wang, Xiang,Wei, Bo,Guo, Han-Zi,Zhang, Zeng-Lin,Chen, Xiao-Bo,Zhao, Guang-Yao,Kong, Xiu-Ying,Jia, Ji-Zeng,Mao, Long,Tan, Xiao-Mei.

[9]Identification and Characterization of 30 K Protein Genes Found in Bombyx mori (Lepidoptera: Bombycidae) Transcriptome. Shi, Xiao-Feng,Li, Yi-Nu,Zhang, Zhi-Fang,Shi, Xiao-Feng,Xiao, Xing-Guo,Yi, Yong-Zhu. 2015

[10]Genome-wide identification and analysis of the MADS-box gene family in apple. Tian, Yi,Dong, Qinglong,Ji, Zhirui,Chi, Fumei,Cong, Peihua,Zhou, Zongshan.

[11]QTL mapping for fiber quality traits across multiple generations and environments in upland cotton. Fu-Ding Sun,Jian-Hong Zhang,Shu-Fang Wang,Wan-Kui Gong,Yu-Zhen Shi,Ai-Ying Liu,Jun-Wen Li,Ju-Wu Gong,Hai-Hong Shang,You-Lu Yuan.

[12]Genome-Wide Analysis of the Sus Gene Family in Cotton. Changsong Zou,Cairui Lu,Haihong Shang,Xinrui Jing,Hailiang Cheng,Youping Zhang,Guoli Song. 2013

[13]Molecular characterization of a transcriptionally active Ty1/copia-like retrotransposon in Gossypium. Yuefen Cao,Yurong Jiang,Mingquan Ding,Shae He,Hua Zhang,Lifeng Lin,Junkang Rong.

[14]Characterization and development of chloroplast microsatellite markers for Gossypium hirsutum, and cross-species amplification in other Gossypium species. Cai, X. Y.,Liu, F.,Zhou, Z. L.,Wang, X. X.,Wang, C. Y.,Wang, Y. H.,Wang, K. B.. 2015

[15]Mapping QTLs for drought tolerance in an F-2:3 population from an inter-specific cross between Gossypium tomentosum and Gossypium hirsutum. J.Y. Zheng,G. Oluoch,M.K. Riaz Khan,X.X. Wang,X.Y. Cai,Z.L. Zhou,C.Y. Wang,Y.H. Wang,X.Y. Li,F. Liu,K.B. Wang. 2016

[16]A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons. Yuling Liu,Renhai Peng,Fang Liu,Xingxing Wang,Xinglei Cui,Zhongli Zhou,Chunying Wang,Xiaoyan Cai,Yuhong Wang,Zhongxu Lin,Kunbo Wang. 2016

[17]Development of EST-SSR markers related to salt tolerance and their application in genetic diversity and evolution analysis in Gossypium. B.H. Wang,P. Zhu,Y.L. Yuan,C.B. Wang,C.M. Yu,H.H. Zhang,X.Y. Zhu,W. Wang,C.B. Yao,Z.M. Zhuang,P. Li. 2014

[18]Induction of cotton ovule culture fibre branching by co-expression of cotton BTL, cotton SIM, and Arabidopsis STI genes. Gaskin Wang,Hongjie Feng,Junling Sun,Xiongming Du. 2013

[19]Cytoplasmic diversity of the cotton genus as revealed by chloroplast microsatellite markers. Li, Pengbo,Hua, Jinping,Li, Pengbo,Liu, Huimin,Li, Zhaohu,Hua, Jinping. 2014

[20]Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes. Chen, Zhiwen,Nie, Hushuai,Pei, Haili,Li, Shuangshuang,Hua, Jinping,Wang, Yumei,Zhang, Lida. 2017

作者其他论文 更多>>

微信小程序