Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q

文献类型: 外文期刊

第一作者: Yang, Zezhong

作者: Yang, Zezhong;Guo, Litao;Yang, Xin;Wen, Yanan;Zeng, Yang;Liu, Yating;Xia, Jixing;Tian, Lixia;Wu, Qingjun;Wang, Shaoli;Xu, Baoyun;Zhang, Youjun;Chen, Chunhai;Wang, Dan;Chen, Ming;Huang, Jinqun;Zhao, Jinyang;Gao, Qiang;Xia, Jinquan;Yin, Ye;Zhou, Xuguo (Joe);Li, Xianchun;Brown, Judith K.;Tan, Xinqiu;Liu, Yong;Ghanim, Murad;Qiu, Baoli;Pan, Huipeng;Chu, Dong;Delatte, Helene;Maruthi, M. N.;Ge, Feng;Zhou, Xueping;Wan, Fanghao;Wang, Xiaowei;Du, Yuzhou;Du, Yuzhou;Luo, Chen;Yan, Fengming;Preisser, Evan L.;Jiao, Xiaoguo;Coates, Brad S.

作者机构:

关键词: Whitefly Bemisia tabaci;Genomics;Assembly;Annotation

期刊名称:GIGASCIENCE ( 影响因子:6.524; 五年影响因子:8.702 )

ISSN: 2047-217X

年卷期: 2017 年 6 卷 5 期

页码:

收录情况: SCI

摘要: The sweetpotato whitefly Bemisia tabaci is a highly destructive agricultural and ornamental crop pest. It damages host plants through both phloem feeding and vectoring plant pathogens. Introductions of B. tabaci are difficult to quarantine and eradicate because of its high reproductive rates, broad host plant range, and insecticide resistance. A total of 791 Gb of raw DNA sequence from whole genome shotgun sequencing, and 13 BAC pooling libraries were generated by Illumina sequencing using different combinations of mate-pair and pair-end libraries. Assembly gave a final genome with a scaffold N50 of 437 kb, and a total length of 658 Mb. Annotation of repetitive elements and coding regions resulted in 265.0 Mb TEs (40.3%) and 20 786 protein-coding genes with putative gene family expansions, respectively. Phylogenetic analysis based on orthologs across 14 arthropod taxa suggested that MED/Q is clustered into a hemipteran clade containing A. pisum and is a sister lineage to a clade containing both R. prolixus and N. lugens. Genome completeness, as estimated using the CEGMA and Benchmarking Universal Single-Copy Orthologs pipelines, reached 96% and 79%. These MED/Q genomic resources lay a foundation for future 'pan-genomic' comparisons of invasive vs. noninvasive, invasive vs. invasive, and native vs. exotic Bemisia, which, in return, will open up new avenues of investigation into whitefly biology, evolution, and management.

分类号:

  • 相关文献

[1]Draft genome of the Chinese mitten crab, Eriocheir sinensis. Bian, Chao,You, Xinxin,Li, Jia,Qiu, Ying,Xu, Junmin,Shi, Qiong,Song, Linsheng,Qiang, Jun,Li, Hongxia,Yu, Juhua,Xu, Pao,Song, Linsheng,Luo, Yongju,Wang, Lingling,Ma, Xingyu,Zhu, Zhifei,Xu, Junmin,Shi, Qiong,Ma, Liang,Wang, Zhaogen,Lei, Ying,Wong, Alex. 2016

[2]Draft genome of the reindeer (Rangifer tarandus). Li, Zhipeng,Ba, Hengxing,Li, Guangyu,Lin, Zeshan,Chen, Lei,Yang, Yongzhi,Wang, Kun,Qiu, Qiang,Wang, Wen. 2017

[3]Draft genome of the lined seahorse, Hippocampus erectus. Lin, Qiang,Zhang, Huixian,Qin, Geng,Zhang, Yanhong,Luo, Wei,Qiu, Ying,Gu, Ruobo,Xu, Pao,Fu, Hongtuo,Qiu, Ying,Gu, Ruobo,Li, Jia,Bian, Chao,Chen, Jieming,You, Xinxin,Fan, Mingjun,Sun, Min,Xu, Junming,Shi, Qiong,Gu, Ruobo,Xu, Junming,Shi, Qiong,Xu, Meng,Bian, Chao,You, Xinxin,Xu, Pao,Xu, Junming,Fu, Hongtuo,Shi, Qiong,Bian, Chao,Venkatesh, Byrappa,Shi, Qiong.

[4]The genome draft of coconut (Cocos nucifera). Xiao, Yong,Fan, Haikuo,Xia, Wei,Zhou, Lixia,Li, Jing,Wu, Yi,Yang, Yaodong,Li, Qiong,Guo, Anping,Ma, Zilong,Peng, Ming,Xu, Pengwei,Xu, Junyang,Liu, Na,Baudouin, Luc,Bocs, Stephanie,Armero, Alix,Baudouin, Luc,Bocs, Stephanie,Armero, Alix,Issali, Auguste Emmanuel. 2017

[5]The draft genome assembly of Rhododendron delavayi Franch. var. delavayi. Zhang, Lu,Cai, Yanfei,Ma, Lulin,Li, Shifeng,Li, Shufa,Xie, Weijia,Song, Jie,Peng, Lvchun,Yan, Huijun,Zou, Ling,Wang, Jihua,Zhang, Lu,Cai, Yanfei,Ma, Lulin,Li, Shifeng,Li, Shufa,Xie, Weijia,Song, Jie,Peng, Lvchun,Yan, Huijun,Zou, Ling,Wang, Jihua,Xu, Pengwei,Ma, Yongpeng,Zhang, Chengjun. 2017

[6]Draft genome sequence of the Tibetan medicinal herb Rhodiola crenulata. Fu, Yuanyuan,Sun, Xiao,Fu, Yuanyuan,Li, Liangwei,Hao, Shijie,Guan, Rui,Fan, Guangyi,Shi, Chengcheng,Wan, Haibo,Chen, Wenbin,Zhang, He,Liu, Guocheng,Ni, Xuemei,Yue, Zhen,Xu, Xun,Liu, Xin,Fu, Yuanyuan,Li, Liangwei,Guan, Rui,Fan, Guangyi,Wan, Haibo,Zhang, He,Fan, Guangyi,Lee, Simon Ming-Yuen,Fan, Guangyi,Lee, Simon Ming-Yuen,Wang, Jihua,Ma, Lulin,You, Jianling.

[7]Chromosome elimination, addition and introgression in intertribal partial hybrids between Brassica rapa and Isatis indigotica. Tu, Yuqin,Sun, Jian,Ge, Xianhong,Li, Zaiyun,Sun, Jian.

[8]MicroRNA profiling of the whitefly Bemisia tabaci Middle East-Aisa Minor I following the acquisition of Tomato yellow leaf curl China virus. Chen, Fangyuan,Yang, Xiuling,Zhou, Xueping,Wang, Bi,Yang, Xiuling,Zhou, Xueping,Wang, Lanlan,Liu, Shu-Sheng,Wang, Xiao-Wei,Ding, Ming,Zhang, Zhongkai. 2016

[9]Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing. Akinyemi, Ibukun A.,Qi, Shuishui,Wu, Qingfa,Wang, Fang,Zhou, Benguo. 2016

[10]M protein is sufficient for assembly and release of Peste des petits ruminants virus-like particles. Wang, Qiuxia,Ou, Changbo,Liu, Xingyou,Yu, Yan,Jiang, Jinqing,Ma, Jinyou,Hu, Jianhe,Wang, Qiuxia,Dou, Yongxi,Chen, Lei,Meng, Xuelian,Zhang, Zhidong,Cai, Xuepeng,Cai, Xuepeng.

[11]A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U. Li, Peirong,Zhang, Shujiang,Li, Fei,Zhang, Shifan,Zhang, Hui,Wang, Xiaowu,Sun, Rifei,Li, Peirong,Bonnema, Guusje,Borm, Theo J. A.. 2017

[12]The complete mitochondrial genome sequence of Malus hupehensis var. pinyiensis. Duan, Naibin,Wang, Nan,Chen, Xuesen,Duan, Naibin,Sun, Honghe,Fei, Zhangjun.

[13]Growth Kinetics of Amyloid-like Fibrils Derived from Individual Subunits of Soy beta-Conglycinin. Wang, Jin-Mei,Yang, Xiao-Quan,Yin, Shou-Wei,Xia, Ning,Qi, Jun-Ru,Yuan, De-Bao,Xia, Ning. 2011

[14]Transcriptome sequencing and analysis of the coconut leaf beetle, Brontispa longissima. Yan, W.,Liu, L.,Li, C. X.,Huang, S. C.,Qin, W. Q.,Yan, W.,Ma, Z. L.,Peng, Z. Q.. 2015

[15]Characterization of complete mitochondrial genome of Dezhou donkey (Equus asinus) and evolutionary analysis. Sun, Yan,Jiang, Qiang,Yang, Chunhong,Wang, Xiuge,Ju, Zhihua,Huang, Jinming,Zhong, Jifeng,Wang, Changfa,Tian, Fang,Wang, Yinchao,Zhou, Xiangshan,Ma, Yong.

[16]De novo assembly of pen shell (Atrina pectinata) transcriptome and screening of its genic microsatellites. Sun, Xiujun,Li, Dongming,Liu, Zhihong,Zhou, Liqing,Wu, Biao,Yang, Aiguo,Sun, Xiujun,Li, Dongming,Liu, Zhihong,Zhou, Liqing,Wu, Biao,Yang, Aiguo. 2017

[17]Large-scale production of enhancer trapping lines for rice functional genomics. Yang, YZ,Peng, H,Huang, HM,Wu, JX,Ha, SR,Huang, DF,Lu, TG.

[18]Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502 2012 and UKH1. Ifeonu, Olukemi O.,Chibucos, Marcus C.,Orvis, Joshua,Su, Qi,Fraser, Claire M.,Silva, Joana C.,Elwin, Kristin,Chalmers, Rachel M.,Guo, Fengguang,Zhang, Haili,Zhu, Guan,Xiao, Lihua,Sun, Mingfei,Kissinger, Jessica C.,Kissinger, Jessica C.,Widmer, Giovanni,Silva, Joana C..

[19]Solexa sequencing based transcriptome analysis of Helicoverpa armigera larvae. Li, Jigang,Li, Xiumin,Chen, Yongli,Yang, Zhongxiang,Guo, Sandui.

[20]DGTF: A database of grape transcription factors. Cai, Bin,Xiong, Ai-Sheng,Peng, Ri-He,Zhou, June,Gao, Feng,Yao, Quan-Hong,Cai, Bin,Zhang, Zhen.

作者其他论文 更多>>