Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection

文献类型： 外文期刊

第一作者： Cheng, Feng

作者： Cheng, Feng;Wu, Jian;Cai, Chengcheng;Fu, Lixia;Liang, Jianli;Zhuang, Mu;Zhang, Yangyong;Wang, Xiaowu;Borm, Theo;Bonnema, Guusje;Zhang, Fenglan

作者机构：

期刊名称：SCIENTIFIC DATA （ 影响因子：6.444； 五年影响因子：9.051 ）

ISSN： 2052-4463

年卷期： 2016 年 3 卷

页码：

收录情况： SCI

摘要： The closely related species Brassica rapa and B. oleracea encompass a wide range of vegetable, fodder and oil crops. The release of their reference genomes has facilitated resequencing collections of B. rapa and B. oleracea aiming to build their variome datasets. These data can be used to investigate the evolutionary relationships between and within the different species and the domestication of the crops, hereafter named morphotypes. These data can also be used in genetic studies aiming at the identification of genes that influence agronomic traits. We selected and resequenced 199 B. rapa and 119 B. oleracea accessions representing 12 and nine morphotypes, respectively. Based on these resequencing data, we obtained 2,249,473 and 3,852,169 high quality SNPs (single-nucleotide polymorphisms), as well as 303,617 and 417,004 InDels for the B. rapa and B. oleracea populations, respectively. The variome datasets of B. rapa and B. oleracea represent valuable resources to researchers working on evolution, domestication or breeding of Brassica vegetable crops.

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