Genetic Architecture Underlying Nascent Speciation-The Evolution of Eurasian Pigs under Domestication
文献类型: 外文期刊
第一作者: Xie, Hai-Bing
作者: Xie, Hai-Bing;Adeola, Adeniyi C.;Zhang, Ya-Ping;Wang, Li-Gang;Zhang, Long-Chao;Wang, Li-Xian;Fan, Chen-Yu;Yin, Xue;Zhang, Ya-Ping;Zeng, Zhao-Bang;Zhang, Ya-Ping
作者机构:
关键词: pig domestication; nascent speciation; partial hybrid inviability; Dobzhansky-Muller incompatibility; autosomal interactions
期刊名称:MOLECULAR BIOLOGY AND EVOLUTION ( 影响因子:16.24; 五年影响因子:18.67 )
ISSN: 0737-4038
年卷期: 2021 年 38 卷 9 期
页码:
收录情况: SCI
摘要: Speciation is a process whereby the evolution of reproductive barriers leads to isolated species. Although many studies have addressed large-effect genetic footprints in the advanced stages of speciation, the genetics of reproductive isolation in nascent stage of speciation remains unclear. Here, we show that pig domestication offers an interesting model for studying the early stages of speciation in great details. Pig breeds have not evolved the large X-effect of hybrid incompatibility commonly observed between "good species." Instead, deleterious epistatic interactions among multiple autosomal loci are common. These weak Dobzhansky-Muller incompatibilities confer partial hybrid inviability with sex biases in crosses between European and East Asian domestic pigs. The genomic incompatibility is enriched in pathways for angiogenesis, androgen receptor signaling and immunity, with an observation of many highly differentiated cis-regulatory variants. Our study suggests that partial hybrid inviability caused by pervasive but weak interactions among autosomal loci may be a hallmark of nascent speciation in mammals.
分类号:
- 相关文献
作者其他论文 更多>>
-
Genome sequencing and assembly of feral chickens in the wild of Sulawesi, Indonesia
作者:Ashari, Hidayat;Han, Jian-Lin;Ashari, Hidayat;Ashari, Hidayat;Liu, Li-Sheng;Cai, Zheng-Fei;Xie, Guo-Li;Yin, Ting-Ting;Zhang, Ya-Ping;Peng, Min-Sheng;Liu, Li-Sheng;Cai, Zheng-Fei;Xie, Guo-Li;Yin, Ting-Ting;Zhang, Ya-Ping;Peng, Min-Sheng;Liu, Li-Sheng;Cai, Zheng-Fei;Yin, Ting-Ting;Zhang, Ya-Ping;Peng, Min-Sheng;Dagong, Muhammad Ihsan Andi;Cai, Zheng-Fei
关键词:admixture; chicken; feralization; genome; red jungle fowl; structural variations
-
The effects of runs-of-homozygosity on pig domestication and breeding
作者:Tao, Lin;Liu, Hang;Adeola, Adeniyi C.;Xie, Hai-Bing;Zhang, Ya-Ping;Tao, Lin;Liu, Hang;Adeola, Adeniyi C.;Xie, Hai-Bing;Zhang, Ya-Ping;Feng, Shu-Tang;Tao, Lin;Liu, Hang;Zhang, Ya-Ping;Feng, Shu-Tang
关键词:Inbreeding depression; Deleterious mutations; Inbred pigs; RNA-seq
-
Genome wide analysis of allele-specific circular RNAs in mammals and their role in cell proliferation
作者:Li, Ying-Ju;Liu, Hang;Zhang, Yue-Dong;Gao, Yun;Zhang, Shu-Run;Otecko, Newton O.;Liu, Lu;Peng, Min-Sheng;Wei, Hong-Jiang;Zhou, Zhong-Yin;Zhang, Ya-Ping;Li, Ying-Ju;Liu, Hang;Zhang, Yue-Dong;Gao, Yun;Zhang, Shu-Run;Otecko, Newton O.;Liu, Lu;Peng, Min-Sheng;Wei, Hong-Jiang;Zhou, Zhong-Yin;Zhang, Ya-Ping;Li, Ying-Ju;Zhang, Yue-Dong;Liu, Yu-Yan;Li, Ying-Ju;Zhang, Yue-Dong;Liu, Yu-Yan;Li, Ying-Ju;Liu, Hang;Zhang, Yue-Dong;Otecko, Newton O.;Li, Aimin;Pu, Li-Xia;Liu, Lu;Irwin, David M.;Yi, Chungen;Xie, Wei;Qin, Yan;Qin, Yan;Wang, Zefeng;Wang, Zefeng;Wei, Hong-Jiang;Wei, Hong-Jiang;Zhang, Ya-Ping
关键词:CircRNA; Allele specific circRNA; Intronic mutation; Cell proliferation
-
Multi-Omics Analysis Provides Insights into a Mosaic-Leaf Phenotype of Astaxanthin-Producing Tobacco
作者:Wang, Jialin;Du, Zaifeng;Lin, Xiaoyang;Yang, Changqing;Zhang, Zhongfeng;Yin, Xue;Fang, Ning;Li, Peng;Sun, Shihao;Chen, Yong
关键词:astaxanthin; mosaic-like spots; chlorophyll metabolism; metabolomics; proteomics; small RNA transcriptomics
-
Genomic insights into local adaptation and phenotypic diversity of Wenchang chickens
作者:Gu, Li-Hong;Zheng, Xin-Li;He, Zhong-Chun;Qi, Yan-Tao;Chen, An-Hong;Wu, Ran -Ran;Zhang, Ya-Ping;Wu, Ran -Ran;Zhang, Ya-Ping;Fu, An;Peng, Min-Sheng;Ma, Cheng;Xing, Zeng-Yang;Chen, Yi-Yong;Lu, Li-Zhi;Zhang, Ya-Ping;Wu, Ran -Ran;Zhang, Ya-Ping;Peng, Min-Sheng;Xu, Tie-Shan
关键词:Wenchang chicken; population structure; feather color; local adaptation; GWAS
-
Repressor elements provide insights into tissue development and phenotypes in pigs
作者:Zhang, Yue-Dong;Guo, Chao;Liu, Hang;Gao, Yun;Irwin, David M.;Hou, Chunhui;Zhou, Zhong-Yin;Zhang, Ya-Ping;Zhang, Yue-Dong;Guo, Chao;Liu, Hang;Gao, Yun;Hou, Chunhui;Zhou, Zhong-Yin;Zhang, Ya-Ping;Zhang, Yue-Dong;Liu, Hang;Hou, Chunhui;Zhang, Yue-Dong;Zhang, Yue-Dong;Guo, Chao;Tan, Yongjun;Niu, Longjian;Niu, Longjian;Wang, Ligang;Wang, Lixian;Irwin, David M.;Hou, Chunhui;Zhang, Ya-Ping
关键词:Repressor elements; Super repressor elements; Silencer; Regulatory model; Tissue development; KLF4; Pig
-
Efficient heterologous biosynthesis of verazine, a metabolic precursor of the anti-cancer drug cyclopamine, in Nicotiana benthamiana
作者:Kou, Chengxi;Liu, Jingling;He, Di;Ma, Pengda;Kou, Chengxi;Yin, Xue;Liu, Jia;Hua, Xin;Xue, Zheyong;Kou, Chengxi;Yin, Xue;Liu, Jia;Hua, Xin;Xue, Zheyong;Ma, Rui;Sun, Wei
关键词: