A genomic variation map provides insights into peanut diversity in China and associations with 28 agronomic traits

文献类型： 外文期刊

第一作者： Lu, Qing

作者： Lu, Qing;Huang, Lu;Liu, Hao;Li, Haifen;Guo, Dandan;Li, Shaoxiong;Liu, Haiyan;Wang, Runfeng;Deng, Quanqing;Du, Puxuan;Liang, Xuanqiang;Hong, Yanbin;Chen, Xiaoping;Garg, Vanika;Chitikineni, Annapurna;Varshney, Rajeev K.;Gangurde, Sunil S.;Pandey, Manish K.

作者机构：

期刊名称：NATURE GENETICS （ 影响因子：30.8； 五年影响因子：37.4 ）

ISSN： 1061-4036

年卷期： 2024 年 56 卷 3 期

页码：

收录情况： SCI

摘要： Peanut (Arachis hypogaea L.) is an important allotetraploid oil and food legume crop. China is one of the world's largest peanut producers and consumers. However, genomic variations underlying the migration and divergence of peanuts in China remain unclear. Here we reported a genome-wide variation map based on the resequencing of 390 peanut accessions, suggesting that peanuts might have been introduced into southern and northern China separately, forming two cultivation centers. Selective sweep analysis highlights asymmetric selection between the two subgenomes during peanut improvement. A classical pedigree from South China offers a context for the examination of the impact of artificial selection on peanut genome. Genome-wide association studies identified 22,309 significant associations with 28 agronomic traits, including candidate genes for plant architecture and oil biosynthesis. Our findings shed light on peanut migration and diversity in China and provide valuable genomic resources for peanut improvement. Resequencing of 390 peanut accessions provides insights into peanut migration and diversity in China. Genome-wide association analysis identifies loci associated with 28 agronomic traits.

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