Wekemo Bioincloud: A user-friendly platform for meta-omics data analyses

文献类型: 外文期刊

第一作者: Gao, Yunyun

作者: Gao, Yunyun;Liu, Yong-Xin;Zhang, Guoxing;Jiang, Shunyao

作者机构:

关键词: bioinformatics; meta-omics; microbiome; user-friendly platform; Wekemo Bioincloud

期刊名称:IMETA ( 影响因子:33.2; 五年影响因子:33.2 )

ISSN: 2770-5986

年卷期: 2024 年 3 卷 1 期

页码:

收录情况: SCI

摘要: The increasing application of meta-omics approaches to investigate the structure, function, and intercellular interactions of microbial communities has led to a surge in available data. However, this abundance of human and environmental microbiome data has exposed new scalability challenges for existing bioinformatics tools. In response, we introduce Wekemo Bioincloud-a specialized platform for -omics studies. This platform offers a comprehensive analysis solution, specifically designed to alleviate the challenges of tool selection for users in the face of expanding data sets. As of now, Wekemo Bioincloud has been regularly equipped with 22 workflows and 65 visualization tools, establishing itself as a user-friendly and widely embraced platform for studying diverse data sets. Additionally, the platform enables the online modification of vector outputs, and the registration-independent personalized dashboard system ensures privacy and traceability. Wekemo Bioincloud is freely available at . Wekemo Bioincloud is a specialized platform for meta-omics studies that addresses scalability challenges in handling vast microbial community data with 22 workflows and 65 visualization tools. It provides comprehensive analysis, online vector output modification, and ensures privacy with a registration-independent dashboard system. image Wekemo Bioincloud offers not just workflows for diverse meta-omics data analysis but also a rich array of tools for effective data visualization. Enables modifying vector outputs online, achieving publication-ready figures. Displays tools' popularity/usage trends, enhancing the platform's flexibility and user-friendly experience.

分类号:

  • 相关文献
作者其他论文 更多>>
  • MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta-omics and bioinformatics

    作者:Bai, Defeng;Ma, Chuang;Xun, Jiani;Luo, Hao;Yang, Haifei;Lyu, Hujie;Gai, Anran;Yousuf, Salsabeel;Gao, Yunyun;Wang, Yao;Liu, Yong-Xin;Ma, Chuang;Yang, Haifei;Lyu, Hujie;Zhu, Zhihao;Gai, Anran;Peng, Kai;Xu, Shanshan;Gao, Yunyun

    关键词:bioinformatics; interpretation; microbiome; multi-omics; visualization

  • Metatranscriptomic insights into the mechanism of 'Multiple Qu' utilization in Jian-flavor Baijiu fermentation

    作者:Xu, Shanshan;Hu, Weiqi;Zhou, Hao;Xu, Boyang;Wang, Ruijuan;Liu, Wuyang;Liu, Yong-xin;Li, Xingjiang;Liu, Yong-xin;Xu, Qinxiang;Zhang, Hui

    关键词:Jian-flavor Baijiu; Multiple-qu fermentation; Single-qu fermentation; Metatranscriptomic analysis; Microbiota

  • Correlation between oral microbiota and dry socket at different time periods on tooth extraction

    作者:Wu, Yujia;Deng, Xuliang;He, Ying;Xu, Mingming;Lyu, Hujie;Liu, Yong-Xin;Lyu, Hujie

    关键词:Oral microbiota; dry socket; 16S rDNA sequencing; random forest; microbial network

  • EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research

    作者:Bai, Defeng;Xun, Jiani;Ma, Chuang;Luo, Hao;Yang, Haifei;Hou, Huiyu;Lv, Hujie;Wan, Xiulin;Wang, Yao;Yousuf, Salsabeel;Zeng, Meiyin;Zhang, Tianyuan;Gao, Yunyun;Liu, Yong-Xin;Chen, Tong;Ma, Chuang;Yang, Haifei;Cao, Chen;Cao, Xiaofeng;Cui, Jianzhou;Deng, Yuan-Ping;Deng, Zhaochao;Yu, Hao;Zhang, Chunfang;Dong, Wenxin;Dong, Wenxue;Du, Juan;Fang, Qunkai;Fang, Wei;Fang, Yue;Luan, Yaning;Fu, Fangtian;Fu, Min;Fu, Yi-Tian;Gao, He;Ge, Jingping;Guo, Yuhao;Gong, Qinglong;Lou, Wenbo;Gu, Lunda;Yang, Li;Guo, Peng;Hai, Tang;Liu, Hao;He, Jieqiang;He, Zi-Yang;Huang, Can;Ji, Shuai;Jiang, ChangHai;Jiang, Gui-Lai;Jiang, Lingjuan;Jin, Ling N.;Li, Changchao;Kan, Yuhe;Kang, Da;Kou, Jin;Lam, Ka-Lung;Li, Chong;Li, Fuyi;Li, Liwei;Li, Miao;Li, Xin;Li, Ye;Li, Zheng-Tao;Zhu, Chengshuai;Liang, Jing;Mo, Jiayuan;Lin, Yongxin;Liu, Changzhen;Liu, Danni;Zhang, Jing;Chen, Shifu;Liu, Fengqin;Liu, Jia;Liu, Tianrui;Liu, Tingting;Wang, Xinlong;Liu, Xinyuan;Luo, Yuanyuan;Liu, Yaqun;Liu, Bangyan;Liu, Minghao;Lv, Hujie;Ma, Tengfei;Mai, Zongjiong;Niu, Dongze;Pan, Zhuo;Qi, Heyuan;Shi, Zhanyao;Song, Chunjiao;Sun, Fuxiang;Sun, Yan;Tian, Sihui;Wang, Guoliang;Wang, Hongyang;Wang, Hongyu;Wang, Huanhuan;Wang, Jing;Wang, Jun;Wang, Kang;Wang, Leli;Yao, Xiaofang;Wang, Shao-kun;Xiao, Zufei;Xing, Huichun;Xu, Yifan;Yang, Song;Yan, Shu-yan;Zhang, Yi-Bo;Yang, Yuanming;Lei, Yu;Yuan, Zhengrong;Zhang, Chunge;Zhang, Huimin;Zhang, Na;Zhang, Yupeng;Zhang, Zheng;Zhou, Mingda;Zhou, Yuanping;Zhu, Zhihao;Zhu, Lin;Zhu, Yue;Zou, Hongqin;Zuo, Anna;Dong, Wenxuan;Wen, Tao;Chen, Shifu;Chen, Shifu;Li, Guoliang

    关键词:metagenome; microbiome; microbiota; pipeline; visualization

  • Disruption of tryptophan metabolism by high-fat diet-triggered maternal immune activation promotes social behavioral deficits in male mice

    作者:Sun, Penghao;Wang, Mengli;Chen, Shulin;Zhu, Xiaoyan;Zhao, Shanting;Chai, Xuejun;Liu, Yong-Xin;Li, Luqi;Zheng, Wei

    关键词:

  • Effects of inactivated Bacillus sp. DU-106 on high-fat diet-induced obesity and the gut-liver axis

    作者:Li, Yanli;Zhao, Wenjun;Jiang, Bingyan;Huang, Xiao-Chun;Liu, Jie;Huang, Junyuan;Du, Bing;Li, Pan;Hu, Bang;Liu, Yong-Xin

    关键词:Bacillus sp. DU-106; inactivation; obesity; gut-liver axis; gut microbiota

  • ggClusterNet 2: An R package for microbial co-occurrence networks and associated indicator correlation patterns

    作者:Wen, Tao;Liu, Lanlan;Niu, Guoqing;Ding, Zhexu;Teng, Xinyang;Yang, Shengdie;Xie, Penghao;Zhang, Tianjiao;Shen, Qirong;Yuan, Jun;Liu, Yong-Xin;Ma, Jie;Liu, Ying;Zhang, Tianjiao;Lu, Zhanyuan;Wang, Lei

    关键词:microbial co-occurrence networks; modularity; multi-omics network; multi-network comparison; network visualization; transkingdom networks